miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 45392 0.66 0.728213
Target:  5'- -aGGCgCGGCaaacgauggAGGGCGgcgcCCUGCgCGCc -3'
miRNA:   3'- caUCGgGUCG---------UCCCGCa---GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 46983 0.73 0.348045
Target:  5'- cGUGGgCCaAGCAGGGaGUCCUGCUUc- -3'
miRNA:   3'- -CAUCgGG-UCGUCCCgCAGGACGAGcg -5'
24338 5' -60.4 NC_005264.1 + 48788 0.68 0.579704
Target:  5'- -aAGgCCGGCGGGGCGaaCgacCUCGCg -3'
miRNA:   3'- caUCgGGUCGUCCCGCagGac-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 53079 0.66 0.699045
Target:  5'- -cGGaCCCAGCGGGaGUGUCUaaGCUgGUg -3'
miRNA:   3'- caUC-GGGUCGUCC-CGCAGGa-CGAgCG- -5'
24338 5' -60.4 NC_005264.1 + 53252 0.67 0.669394
Target:  5'- --uGCCCcGCGGGcGCGUgUCUgGCUUGCu -3'
miRNA:   3'- cauCGGGuCGUCC-CGCA-GGA-CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 58002 0.68 0.609522
Target:  5'- cGUGGCUCAGCGGccccggcggacaGGcCGUCgUGCggCGCc -3'
miRNA:   3'- -CAUCGGGUCGUC------------CC-GCAGgACGa-GCG- -5'
24338 5' -60.4 NC_005264.1 + 64682 0.66 0.718558
Target:  5'- -gGGCCUgccGGC-GGGCaggCCgUGCUCGCc -3'
miRNA:   3'- caUCGGG---UCGuCCCGca-GG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 65591 0.69 0.560975
Target:  5'- -aGGCCCGGCGGccacaucuugcugcuGCGUUCgcgGCUCGUg -3'
miRNA:   3'- caUCGGGUCGUCc--------------CGCAGGa--CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 68252 0.66 0.737789
Target:  5'- --uGCCCGcGCcgcGGGCGgCCUGCU-GCu -3'
miRNA:   3'- cauCGGGU-CGu--CCCGCaGGACGAgCG- -5'
24338 5' -60.4 NC_005264.1 + 87125 0.66 0.718558
Target:  5'- cGgcGCCC-GCGGGGCGcaCCaGUcuUCGCg -3'
miRNA:   3'- -CauCGGGuCGUCCCGCa-GGaCG--AGCG- -5'
24338 5' -60.4 NC_005264.1 + 87742 0.69 0.559993
Target:  5'- -cAGCUCGGCGccGGCG-CCUGC-CGCa -3'
miRNA:   3'- caUCGGGUCGUc-CCGCaGGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 90583 0.69 0.521187
Target:  5'- aUAGCgCGGCAGGucGCGcCUUGCcCGCg -3'
miRNA:   3'- cAUCGgGUCGUCC--CGCaGGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 91063 0.67 0.649469
Target:  5'- uUGGCCCAcGCucucuaGGCGUCCguucuucaGCUUGCc -3'
miRNA:   3'- cAUCGGGU-CGuc----CCGCAGGa-------CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 98640 0.66 0.698063
Target:  5'- -aGGCCgAGUcggaaguGGGGU-UCCUGCUCGa -3'
miRNA:   3'- caUCGGgUCG-------UCCCGcAGGACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 100215 0.67 0.659442
Target:  5'- -gAGCUCcGCGGGGCGcagUUGCUCGg -3'
miRNA:   3'- caUCGGGuCGUCCCGCag-GACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 100724 0.66 0.699045
Target:  5'- cGUGGCuCUGGagAGGGCGcuggUCgaGCUCGCc -3'
miRNA:   3'- -CAUCG-GGUCg-UCCCGC----AGgaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 101229 0.67 0.629492
Target:  5'- aGUAuGCCggCGGCGacGGGCuUCCaGCUCGCg -3'
miRNA:   3'- -CAU-CGG--GUCGU--CCCGcAGGaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 108392 0.66 0.708832
Target:  5'- -cAGCUCGGCGguGGGCaUCCcccgcgccagcaUGUUCGCg -3'
miRNA:   3'- caUCGGGUCGU--CCCGcAGG------------ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 109959 0.66 0.727251
Target:  5'- -cGGCCCugcugauGGCAGGuaccGCGagCCUGCcCGCu -3'
miRNA:   3'- caUCGGG-------UCGUCC----CGCa-GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 110695 0.66 0.737789
Target:  5'- cGUGGggucuauaaucUCCAGCgucuccaucaccGGaGGCcUCCUGCUCGCu -3'
miRNA:   3'- -CAUC-----------GGGUCG------------UC-CCGcAGGACGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.