miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 392 0.68 0.569828
Target:  5'- -cAGCgCCGGCGcGGucGUGUaCCUGUUCGCg -3'
miRNA:   3'- caUCG-GGUCGU-CC--CGCA-GGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 1008 0.66 0.699045
Target:  5'- --cGCCCguguggugggggGGCAGGGgcCGUUCUGUauucUCGCg -3'
miRNA:   3'- cauCGGG------------UCGUCCC--GCAGGACG----AGCG- -5'
24338 5' -60.4 NC_005264.1 + 2684 0.66 0.708832
Target:  5'- -gGGUCC-GCAagcGGGC-UCUUGCUUGCa -3'
miRNA:   3'- caUCGGGuCGU---CCCGcAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 3979 0.71 0.446231
Target:  5'- -cGGCuuuaccgCCAGCAGGGCGgcacaugCCUcCUCGCc -3'
miRNA:   3'- caUCG-------GGUCGUCCCGCa------GGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 5404 0.72 0.387377
Target:  5'- -gGGgCCAGCAGGGCGUacgcggcaUCUGuCUCGg -3'
miRNA:   3'- caUCgGGUCGUCCCGCA--------GGAC-GAGCg -5'
24338 5' -60.4 NC_005264.1 + 5819 0.68 0.619502
Target:  5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3'
miRNA:   3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11060 0.68 0.589616
Target:  5'- -gGGCCUGGCGGGGCaaGUaCCcGcCUCGUa -3'
miRNA:   3'- caUCGGGUCGUCCCG--CA-GGaC-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11297 0.69 0.530798
Target:  5'- --cGCCagGGUAGGGCGUCCacGC-CGCc -3'
miRNA:   3'- cauCGGg-UCGUCCCGCAGGa-CGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 11647 0.67 0.639484
Target:  5'- -cAGCgCGGCAGGGC-UgCUGUcgucgUCGCg -3'
miRNA:   3'- caUCGgGUCGUCCCGcAgGACG-----AGCG- -5'
24338 5' -60.4 NC_005264.1 + 12458 0.67 0.629492
Target:  5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3'
miRNA:   3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 18414 0.68 0.609522
Target:  5'- -cGGCCgGcGCAGGcGCGcCCU-CUCGCu -3'
miRNA:   3'- caUCGGgU-CGUCC-CGCaGGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 24940 0.68 0.589616
Target:  5'- --cGCCCGGCu--GCgGUCCUGUUCGUu -3'
miRNA:   3'- cauCGGGUCGuccCG-CAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 31699 0.75 0.265053
Target:  5'- --uGCCCGccaaaggucgcgcGCGGGGCGUaCUUGUUCGCg -3'
miRNA:   3'- cauCGGGU-------------CGUCCCGCA-GGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 33861 0.7 0.502176
Target:  5'- -gGGUCCGGCAGucccucgccGGCGUCuCUGCUucgaaccuagCGCg -3'
miRNA:   3'- caUCGGGUCGUC---------CCGCAG-GACGA----------GCG- -5'
24338 5' -60.4 NC_005264.1 + 34630 0.71 0.44712
Target:  5'- -aGGCCC-GCGGGGUGUUCgcgGCcaccggUCGCg -3'
miRNA:   3'- caUCGGGuCGUCCCGCAGGa--CG------AGCG- -5'
24338 5' -60.4 NC_005264.1 + 37598 0.68 0.609522
Target:  5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3'
miRNA:   3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5'
24338 5' -60.4 NC_005264.1 + 41422 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5'
24338 5' -60.4 NC_005264.1 + 41658 0.73 0.318691
Target:  5'- --uGCCC-GCAGGG-GUCUaUGCUCGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 41706 0.66 0.718558
Target:  5'- --uGCUC-GUAGGG-GUCCaUGCUUGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 42251 0.67 0.659442
Target:  5'- cGUAGUCCGGcCGGGGCccgCCUauuGCcggCGCg -3'
miRNA:   3'- -CAUCGGGUC-GUCCCGca-GGA---CGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.