miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 161278 0.67 0.659442
Target:  5'- cGUAGUCCGGcCGGGGCccgCCUauuGCcggCGCg -3'
miRNA:   3'- -CAUCGGGUC-GUCCCGca-GGA---CGa--GCG- -5'
24338 5' -60.4 NC_005264.1 + 160732 0.66 0.718558
Target:  5'- --uGCUC-GUAGGG-GUCCaUGCUUGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 160684 0.73 0.318691
Target:  5'- --uGCCC-GCAGGG-GUCUaUGCUCGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 160449 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5'
24338 5' -60.4 NC_005264.1 + 157599 1.11 0.000723
Target:  5'- cGUAGCCCAGCAGGGCGUCCUGCUCGCg -3'
miRNA:   3'- -CAUCGGGUCGUCCCGCAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 156625 0.68 0.609522
Target:  5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3'
miRNA:   3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5'
24338 5' -60.4 NC_005264.1 + 155685 0.66 0.728213
Target:  5'- gGUGaCUCGGCAGGGCGUagccucaggCUGCccuucuUCGCg -3'
miRNA:   3'- -CAUcGGGUCGUCCCGCAg--------GACG------AGCG- -5'
24338 5' -60.4 NC_005264.1 + 152887 0.7 0.502176
Target:  5'- -gGGUCCGGCAGucccucgccGGCGUCuCUGCUucgaaccuagCGCg -3'
miRNA:   3'- caUCGGGUCGUC---------CCGCAG-GACGA----------GCG- -5'
24338 5' -60.4 NC_005264.1 + 150725 0.75 0.265053
Target:  5'- --uGCCCGccaaaggucgcgcGCGGGGCGUaCUUGUUCGCg -3'
miRNA:   3'- cauCGGGU-------------CGUCCCGCA-GGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 149576 0.66 0.728213
Target:  5'- -cAGCCCcgGGCGGaGGgGggCUGCUCGa -3'
miRNA:   3'- caUCGGG--UCGUC-CCgCagGACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 142696 0.68 0.619502
Target:  5'- -gGGCgCCGGCGGcGCGccacgCCUGCcCGCa -3'
miRNA:   3'- caUCG-GGUCGUCcCGCa----GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 133513 0.67 0.669394
Target:  5'- cGUAGCCgCAGgAGGcgcuGUGUCCaUGCauggCGCa -3'
miRNA:   3'- -CAUCGG-GUCgUCC----CGCAGG-ACGa---GCG- -5'
24338 5' -60.4 NC_005264.1 + 132938 0.66 0.689204
Target:  5'- -aGGCUggCAGUAGGGCGUUUcGC-CGCc -3'
miRNA:   3'- caUCGG--GUCGUCCCGCAGGaCGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 131485 0.67 0.629492
Target:  5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3'
miRNA:   3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 124845 0.68 0.619502
Target:  5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3'
miRNA:   3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 124431 0.72 0.387377
Target:  5'- -gGGgCCAGCAGGGCGUacgcggcaUCUGuCUCGg -3'
miRNA:   3'- caUCgGGUCGUCCCGCA--------GGAC-GAGCg -5'
24338 5' -60.4 NC_005264.1 + 123491 0.69 0.530798
Target:  5'- gGUGGCCgcgCGGUugcuGGGCGaUgUGCUCGCg -3'
miRNA:   3'- -CAUCGG---GUCGu---CCCGCaGgACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 123014 0.7 0.465112
Target:  5'- --cGCCaAGCAGGGCGgcacaugCCUcCUCGCc -3'
miRNA:   3'- cauCGGgUCGUCCCGCa------GGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 116415 0.68 0.569828
Target:  5'- -gAGCCCgcGGCaggucgcugGGGGCGUCUgGC-CGCg -3'
miRNA:   3'- caUCGGG--UCG---------UCCCGCAGGaCGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 115257 0.68 0.589616
Target:  5'- aUGGCCU-GCGGGGaguGUCCUGCaguauuguagCGCg -3'
miRNA:   3'- cAUCGGGuCGUCCCg--CAGGACGa---------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.