miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 7652 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 144278 0.68 0.74884
Target:  5'- gGCCgGCGGAugCCG-CUCCGacugacGCCg -3'
miRNA:   3'- gCGG-CGUCUugGGCaGAGGCauc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 110533 0.68 0.739446
Target:  5'- aGCUGCAGAACUuuauaaggCGgagCUagCCGcUAGGCCg -3'
miRNA:   3'- gCGGCGUCUUGG--------GCa--GA--GGC-AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 58902 0.68 0.739446
Target:  5'- gCGCauaGCGGAugCCGcCUCCucgauggcGUAGGUUa -3'
miRNA:   3'- -GCGg--CGUCUugGGCaGAGG--------CAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3201 0.68 0.729964
Target:  5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3'
miRNA:   3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 107124 0.68 0.739446
Target:  5'- aGCCGCGGAcuCCUGUCUa-GgcGGCg -3'
miRNA:   3'- gCGGCGUCUu-GGGCAGAggCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 126679 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 64077 0.68 0.758138
Target:  5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3'
miRNA:   3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 153162 0.69 0.681532
Target:  5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3'
miRNA:   3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 59774 0.69 0.681532
Target:  5'- aCGCuuCGCGGGACUCGUCgcCCGcaggGGGCg -3'
miRNA:   3'- -GCG--GCGUCUUGGGCAGa-GGCa---UCCGg -5'
24340 5' -58.6 NC_005264.1 + 34135 0.69 0.681532
Target:  5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3'
miRNA:   3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 87532 0.69 0.681532
Target:  5'- gCGCgGCAGAugCUG-CagCGUGGGCg -3'
miRNA:   3'- -GCGgCGUCUugGGCaGagGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 65061 0.69 0.671699
Target:  5'- aCGCCGCGccGCCCaUCcaUCCGUgaGGGUCa -3'
miRNA:   3'- -GCGGCGUcuUGGGcAG--AGGCA--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 112502 0.69 0.671699
Target:  5'- uGCCGCAGGacaaggucgacGCCgCGUaCUCgCGgcuccAGGCCg -3'
miRNA:   3'- gCGGCGUCU-----------UGG-GCA-GAG-GCa----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 65684 0.69 0.671699
Target:  5'- aCGUgGCu---CUCGcgucUCUCCGUAGGCCg -3'
miRNA:   3'- -GCGgCGucuuGGGC----AGAGGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 79418 0.69 0.685455
Target:  5'- cCGCgGCGGAACCCagcgugggcggugcgGggUCUCCGgGGGCa -3'
miRNA:   3'- -GCGgCGUCUUGGG---------------C--AGAGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 7324 0.69 0.701077
Target:  5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3'
miRNA:   3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 59121 0.69 0.691327
Target:  5'- cCGCCGCuGAugCCGcgccgccgCUCCacuGGCCc -3'
miRNA:   3'- -GCGGCGuCUugGGCa-------GAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 126351 0.69 0.701077
Target:  5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3'
miRNA:   3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 39917 0.69 0.701077
Target:  5'- uCGCCGUguagccagAGAACUCGaCcCCGggugGGGCCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCaGaGGCa---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.