Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 125264 | 0.67 | 0.776413 |
Target: 5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3' miRNA: 3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 35590 | 0.67 | 0.784482 |
Target: 5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3' miRNA: 3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 92566 | 0.67 | 0.785373 |
Target: 5'- aGuuGCGGGACUCGa--CCG-AGGCCu -3' miRNA: 3'- gCggCGUCUUGGGCagaGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 82175 | 0.67 | 0.785373 |
Target: 5'- uGCCGUgcGGCCgGUCggCGgcGGCCa -3' miRNA: 3'- gCGGCGucUUGGgCAGagGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 42620 | 0.67 | 0.797698 |
Target: 5'- gGCCGCGGAcGCCCGguccgCUgCGUAcccccaucgcgcgccGGCa -3' miRNA: 3'- gCGGCGUCU-UGGGCa----GAgGCAU---------------CCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 21162 | 0.67 | 0.802034 |
Target: 5'- uCGCCGUAGucACCCGaucccagCUCCGaUGuagcgacaucgucGGCCg -3' miRNA: 3'- -GCGGCGUCu-UGGGCa------GAGGC-AU-------------CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 141466 | 0.67 | 0.802897 |
Target: 5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3' miRNA: 3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 108 | 0.67 | 0.811445 |
Target: 5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3' miRNA: 3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 128457 | 0.67 | 0.802897 |
Target: 5'- aGCCGC---GCCCGUCUUuggCGUcGGCa -3' miRNA: 3'- gCGGCGucuUGGGCAGAG---GCAuCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 6237 | 0.67 | 0.776413 |
Target: 5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3' miRNA: 3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 90438 | 0.67 | 0.802897 |
Target: 5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3' miRNA: 3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 142596 | 0.67 | 0.776413 |
Target: 5'- gCGCCGCAaccccugcccACCCGUCaCgCGcgGGGCCa -3' miRNA: 3'- -GCGGCGUcu--------UGGGCAGaG-GCa-UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 104209 | 0.67 | 0.776413 |
Target: 5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3' miRNA: 3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 109383 | 0.67 | 0.802897 |
Target: 5'- gGCCGuCGGAACCUG-UUCUu--GGCCg -3' miRNA: 3'- gCGGC-GUCUUGGGCaGAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 1577 | 0.67 | 0.811445 |
Target: 5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3' miRNA: 3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58679 | 0.67 | 0.767332 |
Target: 5'- gCGCUGCAGGcgcACCCGgcCUCUaUGacGGCCg -3' miRNA: 3'- -GCGGCGUCU---UGGGCa-GAGGcAU--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 102132 | 0.67 | 0.767332 |
Target: 5'- gGCCGCGGccaacAACCUGcugacCUCUGcggAGGCCu -3' miRNA: 3'- gCGGCGUC-----UUGGGCa----GAGGCa--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 126679 | 0.68 | 0.74884 |
Target: 5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3' miRNA: 3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 64077 | 0.68 | 0.758138 |
Target: 5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3' miRNA: 3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 29812 | 0.68 | 0.709804 |
Target: 5'- cCGCCGCGGAAagggucuuCCUGUCuaucuugUCUGUGGcGCUc -3' miRNA: 3'- -GCGGCGUCUU--------GGGCAG-------AGGCAUC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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