Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 58679 | 0.67 | 0.767332 |
Target: 5'- gCGCUGCAGGcgcACCCGgcCUCUaUGacGGCCg -3' miRNA: 3'- -GCGGCGUCU---UGGGCa-GAGGcAU--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58902 | 0.68 | 0.739446 |
Target: 5'- gCGCauaGCGGAugCCGcCUCCucgauggcGUAGGUUa -3' miRNA: 3'- -GCGg--CGUCUugGGCaGAGG--------CAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59121 | 0.69 | 0.691327 |
Target: 5'- cCGCCGCuGAugCCGcgccgccgCUCCacuGGCCc -3' miRNA: 3'- -GCGGCGuCUugGGCa-------GAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59774 | 0.69 | 0.681532 |
Target: 5'- aCGCuuCGCGGGACUCGUCgcCCGcaggGGGCg -3' miRNA: 3'- -GCG--GCGUCUUGGGCAGa-GGCa---UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59802 | 0.7 | 0.622232 |
Target: 5'- cCGCCGCGGAGCCguaCGUagaCGUgaGGGUCg -3' miRNA: 3'- -GCGGCGUCUUGG---GCAgagGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 63265 | 0.69 | 0.661835 |
Target: 5'- uGCCGCuGcGCuuGUC-CaagaGUAGGCCg -3' miRNA: 3'- gCGGCGuCuUGggCAGaGg---CAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 64077 | 0.68 | 0.758138 |
Target: 5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3' miRNA: 3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 65061 | 0.69 | 0.671699 |
Target: 5'- aCGCCGCGccGCCCaUCcaUCCGUgaGGGUCa -3' miRNA: 3'- -GCGGCGUcuUGGGcAG--AGGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 65163 | 0.71 | 0.572931 |
Target: 5'- cCGCgGCGGcGCCC-UCUCUGgccauGGCCg -3' miRNA: 3'- -GCGgCGUCuUGGGcAGAGGCau---CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 65684 | 0.69 | 0.671699 |
Target: 5'- aCGUgGCu---CUCGcgucUCUCCGUAGGCCg -3' miRNA: 3'- -GCGgCGucuuGGGC----AGAGGCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 67634 | 0.71 | 0.542808 |
Target: 5'- gGgCGCAGGgguguccugcgcgGCCCGUCUUCGUuauGGCa -3' miRNA: 3'- gCgGCGUCU-------------UGGGCAGAGGCAu--CCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 72778 | 0.67 | 0.811445 |
Target: 5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3' miRNA: 3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 75000 | 0.66 | 0.836147 |
Target: 5'- cCGuuGUAGAGCacuCCGUCgguaaaggCCGUguugGGGCUa -3' miRNA: 3'- -GCggCGUCUUG---GGCAGa-------GGCA----UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 79418 | 0.69 | 0.685455 |
Target: 5'- cCGCgGCGGAACCCagcgugggcggugcgGggUCUCCGgGGGCa -3' miRNA: 3'- -GCGgCGUCUUGGG---------------C--AGAGGCaUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 82012 | 0.71 | 0.582738 |
Target: 5'- gGCCGCAGAGaugUCGUCUuuGUcccaaGGGUCu -3' miRNA: 3'- gCGGCGUCUUg--GGCAGAggCA-----UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 82175 | 0.67 | 0.785373 |
Target: 5'- uGCCGUgcGGCCgGUCggCGgcGGCCa -3' miRNA: 3'- gCGGCGucUUGGgCAGagGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 85057 | 0.7 | 0.622232 |
Target: 5'- gCGCCGCGG--UgCGUCUCUGc-GGCCg -3' miRNA: 3'- -GCGGCGUCuuGgGCAGAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 87532 | 0.69 | 0.681532 |
Target: 5'- gCGCgGCAGAugCUG-CagCGUGGGCg -3' miRNA: 3'- -GCGgCGUCUugGGCaGagGCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 90438 | 0.67 | 0.802897 |
Target: 5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3' miRNA: 3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 92566 | 0.67 | 0.785373 |
Target: 5'- aGuuGCGGGACUCGa--CCG-AGGCCu -3' miRNA: 3'- gCggCGUCUUGGGCagaGGCaUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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