miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 21162 0.67 0.802034
Target:  5'- uCGCCGUAGucACCCGaucccagCUCCGaUGuagcgacaucgucGGCCg -3'
miRNA:   3'- -GCGGCGUCu-UGGGCa------GAGGC-AU-------------CCGG- -5'
24340 5' -58.6 NC_005264.1 + 23427 0.71 0.572931
Target:  5'- aCGCCaGCGGuGCCCGUCUCg--AGuGCCc -3'
miRNA:   3'- -GCGG-CGUCuUGGGCAGAGgcaUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 26363 0.72 0.496351
Target:  5'- gCGCCGCGGcaggcugcgcGGCgCCGUCUCUGagcgcGGCCu -3'
miRNA:   3'- -GCGGCGUC----------UUG-GGCAGAGGCau---CCGG- -5'
24340 5' -58.6 NC_005264.1 + 29812 0.68 0.709804
Target:  5'- cCGCCGCGGAAagggucuuCCUGUCuaucuugUCUGUGGcGCUc -3'
miRNA:   3'- -GCGGCGUCUU--------GGGCAG-------AGGCAUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 33803 0.68 0.720403
Target:  5'- aCGCCGCuuuGGACCgGcUCgCCGgcaAGGCUg -3'
miRNA:   3'- -GCGGCGu--CUUGGgC-AGaGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 34135 0.69 0.681532
Target:  5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3'
miRNA:   3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 35590 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 36067 0.71 0.543771
Target:  5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3'
miRNA:   3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 38004 0.66 0.834547
Target:  5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3'
miRNA:   3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 38198 0.66 0.851757
Target:  5'- gCGUCGCGcGGCCCGauagcggCUCCGgucGCCg -3'
miRNA:   3'- -GCGGCGUcUUGGGCa------GAGGCaucCGG- -5'
24340 5' -58.6 NC_005264.1 + 39917 0.69 0.701077
Target:  5'- uCGCCGUguagccagAGAACUCGaCcCCGggugGGGCCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCaGaGGCa---UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 41365 0.66 0.851757
Target:  5'- cCGCCGCGaaaacGGCCUcUCUaauguacgCGUAGGCCg -3'
miRNA:   3'- -GCGGCGUc----UUGGGcAGAg-------GCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 42620 0.67 0.797698
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAcccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU---------------CCGg -5'
24340 5' -58.6 NC_005264.1 + 43284 0.71 0.553443
Target:  5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3'
miRNA:   3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 43814 0.66 0.836147
Target:  5'- gCGUCaGCAGAACagaaUCUCCGUAG-CCa -3'
miRNA:   3'- -GCGG-CGUCUUGggc-AGAGGCAUCcGG- -5'
24340 5' -58.6 NC_005264.1 + 46374 0.66 0.836147
Target:  5'- gGCgCGCAGGACaCCGauacgCgggUCGUcaGGGCCa -3'
miRNA:   3'- gCG-GCGUCUUG-GGCa----Ga--GGCA--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 46758 0.71 0.582738
Target:  5'- cCGUCGCAGGACCagaUCUUCGcuUGGGCg -3'
miRNA:   3'- -GCGGCGUCUUGGgc-AGAGGC--AUCCGg -5'
24340 5' -58.6 NC_005264.1 + 50276 0.7 0.612331
Target:  5'- gGCCGCGGAgaucaccaacGCCCuaUUUCGgcGGCCg -3'
miRNA:   3'- gCGGCGUCU----------UGGGcaGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 53738 0.71 0.563164
Target:  5'- uCGUCGU---GCCCGUCUCCGgc-GCCg -3'
miRNA:   3'- -GCGGCGucuUGGGCAGAGGCaucCGG- -5'
24340 5' -58.6 NC_005264.1 + 58246 0.7 0.63214
Target:  5'- cCGCUGCucacucGGCCCGaUC-CCGUGGGCg -3'
miRNA:   3'- -GCGGCGuc----UUGGGC-AGaGGCAUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.