miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 141466 0.67 0.802897
Target:  5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3'
miRNA:   3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 140175 0.73 0.450887
Target:  5'- aGCgGCgAGAcGCUCGUcCUUCGUGGGCCu -3'
miRNA:   3'- gCGgCG-UCU-UGGGCA-GAGGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 139719 0.67 0.811445
Target:  5'- gGCCGagcauuaGGGACCgGggcCUCCGgcGGCa -3'
miRNA:   3'- gCGGCg------UCUUGGgCa--GAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 138384 0.72 0.524602
Target:  5'- cCGCCGCGGAacaaGCCaGUCgCUaUGGGCCa -3'
miRNA:   3'- -GCGGCGUCU----UGGgCAGaGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 136845 0.67 0.811445
Target:  5'- gCGCCGauacuGuACCCGUCUgCCG-AGGUUa -3'
miRNA:   3'- -GCGGCgu---CuUGGGCAGA-GGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 136359 0.69 0.661835
Target:  5'- gCGCCGCAcGGGCCCucuGUCUacuaugaCGUagcauggcccaGGGCCa -3'
miRNA:   3'- -GCGGCGU-CUUGGG---CAGAg------GCA-----------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 133372 0.66 0.836147
Target:  5'- gCGCUGCAccGCCCcccaaUCCGcgugGGGCCg -3'
miRNA:   3'- -GCGGCGUcuUGGGcag--AGGCa---UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 132217 0.7 0.642048
Target:  5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3'
miRNA:   3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 131717 0.66 0.819842
Target:  5'- cCGUCGCGGAccacGCCCGgaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag-----AGGcAUCC-GG- -5'
24340 5' -58.6 NC_005264.1 + 128457 0.67 0.802897
Target:  5'- aGCCGC---GCCCGUCUUuggCGUcGGCa -3'
miRNA:   3'- gCGGCGucuUGGGCAGAG---GCAuCCGg -5'
24340 5' -58.6 NC_005264.1 + 127849 0.66 0.817339
Target:  5'- gGCCGgcggucUAGAACCCGgcgcgcgaauggggUCUCCGUc-GCCg -3'
miRNA:   3'- gCGGC------GUCUUGGGC--------------AGAGGCAucCGG- -5'
24340 5' -58.6 NC_005264.1 + 126679 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 126393 0.66 0.828078
Target:  5'- uCGCCGaggagaGGcAAgUCGUCUCCGc-GGCCu -3'
miRNA:   3'- -GCGGCg-----UC-UUgGGCAGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 126351 0.69 0.701077
Target:  5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3'
miRNA:   3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 126187 0.69 0.651949
Target:  5'- aGCCGCAGGuuggcuuaccgaACUCaucgCUCCG-GGGCCa -3'
miRNA:   3'- gCGGCGUCU------------UGGGca--GAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 125264 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 124427 0.7 0.612331
Target:  5'- -cUCGCAGAGCgCGUgCUCCGc-GGCCu -3'
miRNA:   3'- gcGGCGUCUUGgGCA-GAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 124047 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 123791 0.7 0.642048
Target:  5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3'
miRNA:   3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 122300 0.72 0.515113
Target:  5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3'
miRNA:   3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.