miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 162311 0.71 0.553443
Target:  5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3'
miRNA:   3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 161647 0.67 0.791568
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU--------------CCGg -5'
24340 5' -58.6 NC_005264.1 + 158997 0.66 0.858541
Target:  5'- cCGgCGCAGGACCCaugccaggagcagGUCUCCGcgcGCa -3'
miRNA:   3'- -GCgGCGUCUUGGG-------------CAGAGGCaucCGg -5'
24340 5' -58.6 NC_005264.1 + 157225 0.66 0.851757
Target:  5'- gCGUCGCGcGGCCCGauagcggCUCCGgucGCCg -3'
miRNA:   3'- -GCGGCGUcUUGGGCa------GAGGCaucCGG- -5'
24340 5' -58.6 NC_005264.1 + 157031 0.66 0.834547
Target:  5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3'
miRNA:   3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 156614 1.11 0.001599
Target:  5'- cCGCCGCAGAACCCGUCUCCGUAGGCCc -3'
miRNA:   3'- -GCGGCGUCUUGGGCAGAGGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 155094 0.71 0.543771
Target:  5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3'
miRNA:   3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 155074 0.66 0.828078
Target:  5'- --aCGCuGAAgCCGUcCUCUGUggggAGGCCa -3'
miRNA:   3'- gcgGCGuCUUgGGCA-GAGGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 154617 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 153162 0.69 0.681532
Target:  5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3'
miRNA:   3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 152919 0.72 0.534156
Target:  5'- gCGCCGCAaAGCCCGcagucgcgagUCcCCGaAGGCCc -3'
miRNA:   3'- -GCGGCGUcUUGGGC----------AGaGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 152125 0.66 0.836147
Target:  5'- gCGCCGgGGGACaaGUagagGUAGGCCa -3'
miRNA:   3'- -GCGGCgUCUUGggCAgaggCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 149136 0.72 0.515113
Target:  5'- aGCCGCAcGAGCUgccaGuUCUCCcUGGGCCa -3'
miRNA:   3'- gCGGCGU-CUUGGg---C-AGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 147698 0.66 0.859285
Target:  5'- uCGCCGCAcgcGAuuGCCCGUgUCgGUAGa-- -3'
miRNA:   3'- -GCGGCGU---CU--UGGGCAgAGgCAUCcgg -5'
24340 5' -58.6 NC_005264.1 + 146977 0.66 0.857047
Target:  5'- gGCUGCGGAGCCUc-CUCgagaaucuuuagcaCGUGGGCg -3'
miRNA:   3'- gCGGCGUCUUGGGcaGAG--------------GCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 146487 0.67 0.785373
Target:  5'- ---aGCAGAAgCCuaugGUCUCCcUGGGCCg -3'
miRNA:   3'- gcggCGUCUUgGG----CAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 144827 0.66 0.836147
Target:  5'- uGaCCGCGGccGACCCGcCgCCGUcAGaGCCg -3'
miRNA:   3'- gC-GGCGUC--UUGGGCaGaGGCA-UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 144278 0.68 0.74884
Target:  5'- gGCCgGCGGAugCCG-CUCCGacugacGCCg -3'
miRNA:   3'- gCGG-CGUCUugGGCaGAGGCauc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 142596 0.67 0.776413
Target:  5'- gCGCCGCAaccccugcccACCCGUCaCgCGcgGGGCCa -3'
miRNA:   3'- -GCGGCGUcu--------UGGGCAGaG-GCa-UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 142567 0.69 0.661835
Target:  5'- aGCgCGCAGAcgguCCC--CUCCGcgAGGCCg -3'
miRNA:   3'- gCG-GCGUCUu---GGGcaGAGGCa-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.