Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 156614 | 1.11 | 0.001599 |
Target: 5'- cCGCCGCAGAACCCGUCUCCGUAGGCCc -3' miRNA: 3'- -GCGGCGUCUUGGGCAGAGGCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 104821 | 0.77 | 0.263392 |
Target: 5'- gCGCCGCAcGAcgGCCUGUCcgCCG-GGGCCg -3' miRNA: 3'- -GCGGCGU-CU--UGGGCAGa-GGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 115890 | 0.76 | 0.322649 |
Target: 5'- aGCCGCuagacggagucgGGAACCCGUCcCCGUAGcaguccuugagaGCCg -3' miRNA: 3'- gCGGCG------------UCUUGGGCAGaGGCAUC------------CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 121460 | 0.73 | 0.450887 |
Target: 5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3' miRNA: 3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 2433 | 0.73 | 0.450887 |
Target: 5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3' miRNA: 3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 140175 | 0.73 | 0.450887 |
Target: 5'- aGCgGCgAGAcGCUCGUcCUUCGUGGGCCu -3' miRNA: 3'- gCGgCG-UCU-UGGGCA-GAGGCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 26363 | 0.72 | 0.496351 |
Target: 5'- gCGCCGCGGcaggcugcgcGGCgCCGUCUCUGagcgcGGCCu -3' miRNA: 3'- -GCGGCGUC----------UUG-GGCAGAGGCau---CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 122300 | 0.72 | 0.515113 |
Target: 5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3' miRNA: 3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 149136 | 0.72 | 0.515113 |
Target: 5'- aGCCGCAcGAGCUgccaGuUCUCCcUGGGCCa -3' miRNA: 3'- gCGGCGU-CUUGGg---C-AGAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3273 | 0.72 | 0.515113 |
Target: 5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3' miRNA: 3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 138384 | 0.72 | 0.524602 |
Target: 5'- cCGCCGCGGAacaaGCCaGUCgCUaUGGGCCa -3' miRNA: 3'- -GCGGCGUCU----UGGgCAGaGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 152919 | 0.72 | 0.534156 |
Target: 5'- gCGCCGCAaAGCCCGcagucgcgagUCcCCGaAGGCCc -3' miRNA: 3'- -GCGGCGUcUUGGGC----------AGaGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 67634 | 0.71 | 0.542808 |
Target: 5'- gGgCGCAGGgguguccugcgcgGCCCGUCUUCGUuauGGCa -3' miRNA: 3'- gCgGCGUCU-------------UGGGCAGAGGCAu--CCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 155094 | 0.71 | 0.543771 |
Target: 5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3' miRNA: 3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 36067 | 0.71 | 0.543771 |
Target: 5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3' miRNA: 3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 115987 | 0.71 | 0.553443 |
Target: 5'- aGUgGCGGAACCCuUCUgUG-AGGCCg -3' miRNA: 3'- gCGgCGUCUUGGGcAGAgGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 162311 | 0.71 | 0.553443 |
Target: 5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3' miRNA: 3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 43284 | 0.71 | 0.553443 |
Target: 5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3' miRNA: 3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 53738 | 0.71 | 0.563164 |
Target: 5'- uCGUCGU---GCCCGUCUCCGgc-GCCg -3' miRNA: 3'- -GCGGCGucuUGGGCAGAGGCaucCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 65163 | 0.71 | 0.572931 |
Target: 5'- cCGCgGCGGcGCCC-UCUCUGgccauGGCCg -3' miRNA: 3'- -GCGgCGUCuUGGGcAGAGGCau---CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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