miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 2728 0.71 0.572931
Target:  5'- cCGCgGCcGGGCCCGUCUUC-UAGGUUu -3'
miRNA:   3'- -GCGgCGuCUUGGGCAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 23427 0.71 0.572931
Target:  5'- aCGCCaGCGGuGCCCGUCUCg--AGuGCCc -3'
miRNA:   3'- -GCGG-CGUCuUGGGCAGAGgcaUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 16437 0.71 0.582738
Target:  5'- uGCCGCGGGGCCUG-C-CCGcGGGUg -3'
miRNA:   3'- gCGGCGUCUUGGGCaGaGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 46758 0.71 0.582738
Target:  5'- cCGUCGCAGGACCagaUCUUCGcuUGGGCg -3'
miRNA:   3'- -GCGGCGUCUUGGgc-AGAGGC--AUCCGg -5'
24340 5' -58.6 NC_005264.1 + 105888 0.71 0.582738
Target:  5'- -aCCGCGGAuucuacaugaaACCCGUCgccCCGUGcGCCa -3'
miRNA:   3'- gcGGCGUCU-----------UGGGCAGa--GGCAUcCGG- -5'
24340 5' -58.6 NC_005264.1 + 82012 0.71 0.582738
Target:  5'- gGCCGCAGAGaugUCGUCUuuGUcccaaGGGUCu -3'
miRNA:   3'- gCGGCGUCUUg--GGCAGAggCA-----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 124047 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 5020 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 124427 0.7 0.612331
Target:  5'- -cUCGCAGAGCgCGUgCUCCGc-GGCCu -3'
miRNA:   3'- gcGGCGUCUUGgGCA-GAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 21087 0.7 0.612331
Target:  5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3'
miRNA:   3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 109708 0.7 0.612331
Target:  5'- cCGCgGCAGAuuGCCCGgcCUCCuc-GGCCc -3'
miRNA:   3'- -GCGgCGUCU--UGGGCa-GAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 50276 0.7 0.612331
Target:  5'- gGCCGCGGAgaucaccaacGCCCuaUUUCGgcGGCCg -3'
miRNA:   3'- gCGGCGUCU----------UGGGcaGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 85057 0.7 0.622232
Target:  5'- gCGCCGCGG--UgCGUCUCUGc-GGCCg -3'
miRNA:   3'- -GCGGCGUCuuGgGCAGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 59802 0.7 0.622232
Target:  5'- cCGCCGCGGAGCCguaCGUagaCGUgaGGGUCg -3'
miRNA:   3'- -GCGGCGUCUUGG---GCAgagGCA--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 102681 0.7 0.622232
Target:  5'- uGCUGaCAGAGgCCG-CgcaCCGUAGGCUg -3'
miRNA:   3'- gCGGC-GUCUUgGGCaGa--GGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 97639 0.7 0.622232
Target:  5'- aGCCGCAGAGCaaaCGUUgCCGUgaaAGcGCUg -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGaGGCA---UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 94 0.7 0.622232
Target:  5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3'
miRNA:   3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 58246 0.7 0.63214
Target:  5'- cCGCUGCucacucGGCCCGaUC-CCGUGGGCg -3'
miRNA:   3'- -GCGGCGuc----UUGGGC-AGaGGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 121749 0.7 0.63214
Target:  5'- gGCCGCcccggccGGGCCCGUCUUC-UAGGUUu -3'
miRNA:   3'- gCGGCGu------CUUGGGCAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 132217 0.7 0.642048
Target:  5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3'
miRNA:   3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.