miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 95802 0.66 0.816502
Target:  5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5'
24340 5' -58.6 NC_005264.1 + 157031 0.66 0.834547
Target:  5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3'
miRNA:   3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 46374 0.66 0.836147
Target:  5'- gGCgCGCAGGACaCCGauacgCgggUCGUcaGGGCCa -3'
miRNA:   3'- gCG-GCGUCUUG-GGCa----Ga--GGCA--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 131717 0.66 0.819842
Target:  5'- cCGUCGCGGAccacGCCCGgaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag-----AGGcAUCC-GG- -5'
24340 5' -58.6 NC_005264.1 + 100383 0.66 0.828078
Target:  5'- uGCUGCGGAugCCG-CUgcugcgccCCGUAuuGGUCg -3'
miRNA:   3'- gCGGCGUCUugGGCaGA--------GGCAU--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 43814 0.66 0.836147
Target:  5'- gCGUCaGCAGAACagaaUCUCCGUAG-CCa -3'
miRNA:   3'- -GCGG-CGUCUUGggc-AGAGGCAUCcGG- -5'
24340 5' -58.6 NC_005264.1 + 98306 0.66 0.859285
Target:  5'- -aUCGCGGAACCCccCUCCGc-GGCg -3'
miRNA:   3'- gcGGCGUCUUGGGcaGAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 147698 0.66 0.859285
Target:  5'- uCGCCGCAcgcGAuuGCCCGUgUCgGUAGa-- -3'
miRNA:   3'- -GCGGCGU---CU--UGGGCAgAGgCAUCcgg -5'
24340 5' -58.6 NC_005264.1 + 158997 0.66 0.858541
Target:  5'- cCGgCGCAGGACCCaugccaggagcagGUCUCCGcgcGCa -3'
miRNA:   3'- -GCgGCGUCUUGGG-------------CAGAGGCaucCGg -5'
24340 5' -58.6 NC_005264.1 + 133372 0.66 0.836147
Target:  5'- gCGCUGCAccGCCCcccaaUCCGcgugGGGCCg -3'
miRNA:   3'- -GCGGCGUcuUGGGcag--AGGCa---UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 144827 0.66 0.836147
Target:  5'- uGaCCGCGGccGACCCGcCgCCGUcAGaGCCg -3'
miRNA:   3'- gC-GGCGUC--UUGGGCaGaGGCA-UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 125264 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 104209 0.67 0.776413
Target:  5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3'
miRNA:   3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 105244 0.67 0.767332
Target:  5'- gGCCGCGGAGCaaaCGUUuagagCCau-GGCCa -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGa----GGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 161647 0.67 0.791568
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU--------------CCGg -5'
24340 5' -58.6 NC_005264.1 + 118815 0.67 0.794203
Target:  5'- gGCCGUcGAugU--UCUCCGUAuGGCCc -3'
miRNA:   3'- gCGGCGuCUugGgcAGAGGCAU-CCGG- -5'
24340 5' -58.6 NC_005264.1 + 136845 0.67 0.811445
Target:  5'- gCGCCGauacuGuACCCGUCUgCCG-AGGUUa -3'
miRNA:   3'- -GCGGCgu---CuUGGGCAGA-GGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 139719 0.67 0.811445
Target:  5'- gGCCGagcauuaGGGACCgGggcCUCCGgcGGCa -3'
miRNA:   3'- gCGGCg------UCUUGGgCa--GAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 119135 0.67 0.811445
Target:  5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3'
miRNA:   3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 154617 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.