miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 121749 0.7 0.63214
Target:  5'- gGCCGCcccggccGGGCCCGUCUUC-UAGGUUu -3'
miRNA:   3'- gCGGCGu------CUUGGGCAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 124047 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 21087 0.7 0.612331
Target:  5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3'
miRNA:   3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 50276 0.7 0.612331
Target:  5'- gGCCGCGGAgaucaccaacGCCCuaUUUCGgcGGCCg -3'
miRNA:   3'- gCGGCGUCU----------UGGGcaGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 109708 0.7 0.612331
Target:  5'- cCGCgGCAGAuuGCCCGgcCUCCuc-GGCCc -3'
miRNA:   3'- -GCGgCGUCU--UGGGCa-GAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 94 0.7 0.622232
Target:  5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3'
miRNA:   3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 97639 0.7 0.622232
Target:  5'- aGCCGCAGAGCaaaCGUUgCCGUgaaAGcGCUg -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGaGGCA---UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 102681 0.7 0.622232
Target:  5'- uGCUGaCAGAGgCCG-CgcaCCGUAGGCUg -3'
miRNA:   3'- gCGGC-GUCUUgGGCaGa--GGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 59802 0.7 0.622232
Target:  5'- cCGCCGCGGAGCCguaCGUagaCGUgaGGGUCg -3'
miRNA:   3'- -GCGGCGUCUUGG---GCAgagGCA--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 105888 0.71 0.582738
Target:  5'- -aCCGCGGAuucuacaugaaACCCGUCgccCCGUGcGCCa -3'
miRNA:   3'- gcGGCGUCU-----------UGGGCAGa--GGCAUcCGG- -5'
24340 5' -58.6 NC_005264.1 + 82012 0.71 0.582738
Target:  5'- gGCCGCAGAGaugUCGUCUuuGUcccaaGGGUCu -3'
miRNA:   3'- gCGGCGUCUUg--GGCAGAggCA-----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 16437 0.71 0.582738
Target:  5'- uGCCGCGGGGCCUG-C-CCGcGGGUg -3'
miRNA:   3'- gCGGCGUCUUGGGCaGaGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 121460 0.73 0.450887
Target:  5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3'
miRNA:   3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 122300 0.72 0.515113
Target:  5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3'
miRNA:   3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 138384 0.72 0.524602
Target:  5'- cCGCCGCGGAacaaGCCaGUCgCUaUGGGCCa -3'
miRNA:   3'- -GCGGCGUCU----UGGgCAGaGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 155094 0.71 0.543771
Target:  5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3'
miRNA:   3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 162311 0.71 0.553443
Target:  5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3'
miRNA:   3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 53738 0.71 0.563164
Target:  5'- uCGUCGU---GCCCGUCUCCGgc-GCCg -3'
miRNA:   3'- -GCGGCGucuUGGGCAGAGGCaucCGG- -5'
24340 5' -58.6 NC_005264.1 + 23427 0.71 0.572931
Target:  5'- aCGCCaGCGGuGCCCGUCUCg--AGuGCCc -3'
miRNA:   3'- -GCGG-CGUCuUGGGCAGAGgcaUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 65163 0.71 0.572931
Target:  5'- cCGCgGCGGcGCCC-UCUCUGgccauGGCCg -3'
miRNA:   3'- -GCGgCGUCuUGGGcAGAGGCau---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.