miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 98306 0.66 0.859285
Target:  5'- -aUCGCGGAACCCccCUCCGc-GGCg -3'
miRNA:   3'- gcGGCGUCUUGGGcaGAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 95802 0.66 0.816502
Target:  5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5'
24340 5' -58.6 NC_005264.1 + 72778 0.67 0.811445
Target:  5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3'
miRNA:   3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 156614 1.11 0.001599
Target:  5'- cCGCCGCAGAACCCGUCUCCGUAGGCCc -3'
miRNA:   3'- -GCGGCGUCUUGGGCAGAGGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3074 0.66 0.854791
Target:  5'- uCGCCGCgacuggcggcggccgAGGACCCGUUcgggcgauUCCc--GGCCc -3'
miRNA:   3'- -GCGGCG---------------UCUUGGGCAG--------AGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 38198 0.66 0.851757
Target:  5'- gCGUCGCGcGGCCCGauagcggCUCCGgucGCCg -3'
miRNA:   3'- -GCGGCGUcUUGGGCa------GAGGCaucCGG- -5'
24340 5' -58.6 NC_005264.1 + 20846 0.66 0.84715
Target:  5'- uGCCGUauuccacagucuGGAGCCUgcuacuccaugcccuGUUUCCGUuaaacaugAGGCCu -3'
miRNA:   3'- gCGGCG------------UCUUGGG---------------CAGAGGCA--------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 1509 0.66 0.844042
Target:  5'- aCGCCGCuGGcuGCgCCGUUUUUugGGGCCc -3'
miRNA:   3'- -GCGGCGuCU--UG-GGCAGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 152125 0.66 0.836147
Target:  5'- gCGCCGgGGGACaaGUagagGUAGGCCa -3'
miRNA:   3'- -GCGGCgUCUUGggCAgaggCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 127849 0.66 0.817339
Target:  5'- gGCCGgcggucUAGAACCCGgcgcgcgaauggggUCUCCGUc-GCCg -3'
miRNA:   3'- gCGGC------GUCUUGGGC--------------AGAGGCAucCGG- -5'
24340 5' -58.6 NC_005264.1 + 155074 0.66 0.828078
Target:  5'- --aCGCuGAAgCCGUcCUCUGUggggAGGCCa -3'
miRNA:   3'- gcgGCGuCUUgGGCA-GAGGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 75000 0.66 0.836147
Target:  5'- cCGuuGUAGAGCacuCCGUCgguaaaggCCGUguugGGGCUa -3'
miRNA:   3'- -GCggCGUCUUG---GGCAGa-------GGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 147698 0.66 0.859285
Target:  5'- uCGCCGCAcgcGAuuGCCCGUgUCgGUAGa-- -3'
miRNA:   3'- -GCGGCGU---CU--UGGGCAgAGgCAUCcgg -5'
24340 5' -58.6 NC_005264.1 + 126393 0.66 0.828078
Target:  5'- uCGCCGaggagaGGcAAgUCGUCUCCGc-GGCCu -3'
miRNA:   3'- -GCGGCg-----UC-UUgGGCAGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 158997 0.66 0.858541
Target:  5'- cCGgCGCAGGACCCaugccaggagcagGUCUCCGcgcGCa -3'
miRNA:   3'- -GCgGCGUCUUGGG-------------CAGAGGCaucCGg -5'
24340 5' -58.6 NC_005264.1 + 104928 0.66 0.844042
Target:  5'- gGCgGCGGAACCCccagCCGUgccaAGcGCCg -3'
miRNA:   3'- gCGgCGUCUUGGGcagaGGCA----UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 104334 0.66 0.828078
Target:  5'- aCGCCGCuuacgaggAGGugCCG-CUCagGcGGGCCg -3'
miRNA:   3'- -GCGGCG--------UCUugGGCaGAGg-CaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 108 0.67 0.811445
Target:  5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3'
miRNA:   3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 146977 0.66 0.857047
Target:  5'- gGCUGCGGAGCCUc-CUCgagaaucuuuagcaCGUGGGCg -3'
miRNA:   3'- gCGGCGUCUUGGGcaGAG--------------GCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 12690 0.66 0.851757
Target:  5'- cCGUCGCGGAccacGCCCGggaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag------AGGcAUCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.