miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 95802 0.66 0.816502
Target:  5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5'
24340 5' -58.6 NC_005264.1 + 97639 0.7 0.622232
Target:  5'- aGCCGCAGAGCaaaCGUUgCCGUgaaAGcGCUg -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGaGGCA---UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 98306 0.66 0.859285
Target:  5'- -aUCGCGGAACCCccCUCCGc-GGCg -3'
miRNA:   3'- gcGGCGUCUUGGGcaGAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 100383 0.66 0.828078
Target:  5'- uGCUGCGGAugCCG-CUgcugcgccCCGUAuuGGUCg -3'
miRNA:   3'- gCGGCGUCUugGGCaGA--------GGCAU--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 102132 0.67 0.767332
Target:  5'- gGCCGCGGccaacAACCUGcugacCUCUGcggAGGCCu -3'
miRNA:   3'- gCGGCGUC-----UUGGGCa----GAGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 102681 0.7 0.622232
Target:  5'- uGCUGaCAGAGgCCG-CgcaCCGUAGGCUg -3'
miRNA:   3'- gCGGC-GUCUUgGGCaGa--GGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104209 0.67 0.776413
Target:  5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3'
miRNA:   3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104334 0.66 0.828078
Target:  5'- aCGCCGCuuacgaggAGGugCCG-CUCagGcGGGCCg -3'
miRNA:   3'- -GCGGCG--------UCUugGGCaGAGg-CaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104821 0.77 0.263392
Target:  5'- gCGCCGCAcGAcgGCCUGUCcgCCG-GGGCCg -3'
miRNA:   3'- -GCGGCGU-CU--UGGGCAGa-GGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104928 0.66 0.844042
Target:  5'- gGCgGCGGAACCCccagCCGUgccaAGcGCCg -3'
miRNA:   3'- gCGgCGUCUUGGGcagaGGCA----UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 105244 0.67 0.767332
Target:  5'- gGCCGCGGAGCaaaCGUUuagagCCau-GGCCa -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGa----GGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 105888 0.71 0.582738
Target:  5'- -aCCGCGGAuucuacaugaaACCCGUCgccCCGUGcGCCa -3'
miRNA:   3'- gcGGCGUCU-----------UGGGCAGa--GGCAUcCGG- -5'
24340 5' -58.6 NC_005264.1 + 105951 0.68 0.710771
Target:  5'- uCGCC-CAGuuCCCgGUCUUCGacagUAGGCCu -3'
miRNA:   3'- -GCGGcGUCuuGGG-CAGAGGC----AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 106355 0.66 0.841692
Target:  5'- uGCCGCuuggcgcgguuAGAuuucuccgcguucuACCCGUgUCUGUAcGCCg -3'
miRNA:   3'- gCGGCG-----------UCU--------------UGGGCAgAGGCAUcCGG- -5'
24340 5' -58.6 NC_005264.1 + 107124 0.68 0.739446
Target:  5'- aGCCGCGGAcuCCUGUCUa-GgcGGCg -3'
miRNA:   3'- gCGGCGUCUu-GGGCAGAggCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 109383 0.67 0.802897
Target:  5'- gGCCGuCGGAACCUG-UUCUu--GGCCg -3'
miRNA:   3'- gCGGC-GUCUUGGGCaGAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 109708 0.7 0.612331
Target:  5'- cCGCgGCAGAuuGCCCGgcCUCCuc-GGCCc -3'
miRNA:   3'- -GCGgCGUCU--UGGGCa-GAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 110533 0.68 0.739446
Target:  5'- aGCUGCAGAACUuuauaaggCGgagCUagCCGcUAGGCCg -3'
miRNA:   3'- gCGGCGUCUUGG--------GCa--GA--GGC-AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 112502 0.69 0.671699
Target:  5'- uGCCGCAGGacaaggucgacGCCgCGUaCUCgCGgcuccAGGCCg -3'
miRNA:   3'- gCGGCGUCU-----------UGG-GCA-GAG-GCa----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 115890 0.76 0.322649
Target:  5'- aGCCGCuagacggagucgGGAACCCGUCcCCGUAGcaguccuugagaGCCg -3'
miRNA:   3'- gCGGCG------------UCUUGGGCAGaGGCAUC------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.