miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 156065 1.06 0.002789
Target:  5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3'
miRNA:   3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 103133 0.75 0.311745
Target:  5'- gGUAGCC--GCCGGCGCggcGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuaCGGCCGCGa--CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 25606 0.72 0.461079
Target:  5'- --cGCCggGCCGGCGUUGCG-GAAc- -3'
miRNA:   3'- cauCGGuaCGGCCGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 137936 0.72 0.470449
Target:  5'- uUGGUgGUGCCGGUaucGUUGCGCGAc-- -3'
miRNA:   3'- cAUCGgUACGGCCG---CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 150862 0.72 0.478015
Target:  5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3'
miRNA:   3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 31836 0.72 0.478015
Target:  5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3'
miRNA:   3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 114110 0.72 0.49912
Target:  5'- -gGGCCA-GUCGGCcCUGCcGCGAAUAa -3'
miRNA:   3'- caUCGGUaCGGCCGcGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 33530 0.71 0.50885
Target:  5'- ---cCCAUaggGUCGGCGCUGCcGCGAAUAa -3'
miRNA:   3'- caucGGUA---CGGCCGCGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 117611 0.71 0.518659
Target:  5'- -cGGCCAUGCCuaCGCUGCGCu---- -3'
miRNA:   3'- caUCGGUACGGccGCGACGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 158568 0.71 0.528543
Target:  5'- -cAGCCAUGCaGGCcgaacagacucGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGgCCG-----------CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 66495 0.71 0.538494
Target:  5'- ---cCCGUGCCGGCGaugGCGCGGu-- -3'
miRNA:   3'- caucGGUACGGCCGCga-CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 40272 0.71 0.558583
Target:  5'- --cGCgGUG-CGGCGCUGCGUGAc-- -3'
miRNA:   3'- cauCGgUACgGCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 2181 0.7 0.568707
Target:  5'- -cGGCCGuugccccuccauUGCCGGCGCccaUGCGCGc--- -3'
miRNA:   3'- caUCGGU------------ACGGCCGCG---ACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 20841 0.7 0.578876
Target:  5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3'
miRNA:   3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 120284 0.7 0.609588
Target:  5'- -cGGCaaggcUGCCGGCGCgaagacGCGCGGAa- -3'
miRNA:   3'- caUCGgu---ACGGCCGCGa-----CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 69850 0.7 0.609588
Target:  5'- --cGCUAcgGCCGGUGCUGCgGCGcGUGg -3'
miRNA:   3'- cauCGGUa-CGGCCGCGACG-CGCuUAU- -5'
24341 5' -57.6 NC_005264.1 + 126098 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 7071 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 148446 0.69 0.619869
Target:  5'- gGUGGUCAgaacaGCCGGCGCc-CGCGAGg- -3'
miRNA:   3'- -CAUCGGUa----CGGCCGCGacGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 138191 0.69 0.637364
Target:  5'- gGUGGCCAgaaCCGuggggauuaagcauGCGCUGCGCGGu-- -3'
miRNA:   3'- -CAUCGGUac-GGC--------------CGCGACGCGCUuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.