Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24341 | 5' | -57.6 | NC_005264.1 | + | 140 | 0.67 | 0.760935 |
Target: 5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3' miRNA: 3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 1164 | 0.67 | 0.760935 |
Target: 5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3' miRNA: 3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 2181 | 0.7 | 0.568707 |
Target: 5'- -cGGCCGuugccccuccauUGCCGGCGCccaUGCGCGc--- -3' miRNA: 3'- caUCGGU------------ACGGCCGCG---ACGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 3752 | 0.66 | 0.824587 |
Target: 5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3' miRNA: 3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 7071 | 0.69 | 0.619869 |
Target: 5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3' miRNA: 3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 15581 | 0.69 | 0.640451 |
Target: 5'- cGUGGCCAagcuUGCgGGCGCaGCuGCGGc-- -3' miRNA: 3'- -CAUCGGU----ACGgCCGCGaCG-CGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 18098 | 0.67 | 0.789089 |
Target: 5'- --uGUUAUGCCGGCaGaugGCGCGAGa- -3' miRNA: 3'- cauCGGUACGGCCG-Cga-CGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 19953 | 0.68 | 0.701765 |
Target: 5'- --cGCCGUGauggagaaaGGCGCgGCGCGAGUc -3' miRNA: 3'- cauCGGUACgg-------CCGCGaCGCGCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 20841 | 0.7 | 0.578876 |
Target: 5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3' miRNA: 3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 24956 | 0.68 | 0.721825 |
Target: 5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3' miRNA: 3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 25222 | 0.68 | 0.721825 |
Target: 5'- gGUGGCCAgggcagUGCCGGCagaGUUGagGCGAGUu -3' miRNA: 3'- -CAUCGGU------ACGGCCG---CGACg-CGCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 25606 | 0.72 | 0.461079 |
Target: 5'- --cGCCggGCCGGCGUUGCG-GAAc- -3' miRNA: 3'- cauCGGuaCGGCCGCGACGCgCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 31836 | 0.72 | 0.478015 |
Target: 5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3' miRNA: 3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 33530 | 0.71 | 0.50885 |
Target: 5'- ---cCCAUaggGUCGGCGCUGCcGCGAAUAa -3' miRNA: 3'- caucGGUA---CGGCCGCGACG-CGCUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 36127 | 0.66 | 0.815958 |
Target: 5'- -cGGCCGacgauuucuuUGCCcacguaGCGCUGUGCGAGc- -3' miRNA: 3'- caUCGGU----------ACGGc-----CGCGACGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 36692 | 0.68 | 0.721825 |
Target: 5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3' miRNA: 3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 36755 | 0.68 | 0.721825 |
Target: 5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3' miRNA: 3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 40272 | 0.71 | 0.558583 |
Target: 5'- --cGCgGUG-CGGCGCUGCGUGAc-- -3' miRNA: 3'- cauCGgUACgGCCGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 42251 | 0.67 | 0.766657 |
Target: 5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3' miRNA: 3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 42361 | 0.68 | 0.71183 |
Target: 5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3' miRNA: 3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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