miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 140 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 1164 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 2181 0.7 0.568707
Target:  5'- -cGGCCGuugccccuccauUGCCGGCGCccaUGCGCGc--- -3'
miRNA:   3'- caUCGGU------------ACGGCCGCG---ACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 3752 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 7071 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 15581 0.69 0.640451
Target:  5'- cGUGGCCAagcuUGCgGGCGCaGCuGCGGc-- -3'
miRNA:   3'- -CAUCGGU----ACGgCCGCGaCG-CGCUuau -5'
24341 5' -57.6 NC_005264.1 + 18098 0.67 0.789089
Target:  5'- --uGUUAUGCCGGCaGaugGCGCGAGa- -3'
miRNA:   3'- cauCGGUACGGCCG-Cga-CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 19953 0.68 0.701765
Target:  5'- --cGCCGUGauggagaaaGGCGCgGCGCGAGUc -3'
miRNA:   3'- cauCGGUACgg-------CCGCGaCGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 20841 0.7 0.578876
Target:  5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3'
miRNA:   3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 24956 0.68 0.721825
Target:  5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3'
miRNA:   3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 25222 0.68 0.721825
Target:  5'- gGUGGCCAgggcagUGCCGGCagaGUUGagGCGAGUu -3'
miRNA:   3'- -CAUCGGU------ACGGCCG---CGACg-CGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 25606 0.72 0.461079
Target:  5'- --cGCCggGCCGGCGUUGCG-GAAc- -3'
miRNA:   3'- cauCGGuaCGGCCGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 31836 0.72 0.478015
Target:  5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3'
miRNA:   3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 33530 0.71 0.50885
Target:  5'- ---cCCAUaggGUCGGCGCUGCcGCGAAUAa -3'
miRNA:   3'- caucGGUA---CGGCCGCGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 36127 0.66 0.815958
Target:  5'- -cGGCCGacgauuucuuUGCCcacguaGCGCUGUGCGAGc- -3'
miRNA:   3'- caUCGGU----------ACGGc-----CGCGACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 36692 0.68 0.721825
Target:  5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3'
miRNA:   3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 36755 0.68 0.721825
Target:  5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3'
miRNA:   3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5'
24341 5' -57.6 NC_005264.1 + 40272 0.71 0.558583
Target:  5'- --cGCgGUG-CGGCGCUGCGUGAc-- -3'
miRNA:   3'- cauCGgUACgGCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 42251 0.67 0.766657
Target:  5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3'
miRNA:   3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 42361 0.68 0.71183
Target:  5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3'
miRNA:   3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.