miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 48482 0.68 0.721825
Target:  5'- aGUAGCC---CCGcGCGUUGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuacGGC-CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 52204 0.69 0.650736
Target:  5'- -gGGCCGUGg-GGCGCggugGCGCGAGc- -3'
miRNA:   3'- caUCGGUACggCCGCGa---CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 52971 0.68 0.721825
Target:  5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3'
miRNA:   3'- caUCGgUACGG---------CCGCgACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 55144 0.67 0.770448
Target:  5'- cGUGcGCUGUGCUGGCGCaGCGUa---- -3'
miRNA:   3'- -CAU-CGGUACGGCCGCGaCGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 56802 0.66 0.824587
Target:  5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGGc------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 57492 0.66 0.824587
Target:  5'- -cGGCgAagaUGCUGGCGC-GCGCGGc-- -3'
miRNA:   3'- caUCGgU---ACGGCCGCGaCGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 58366 0.67 0.741574
Target:  5'- cUGGCgGgGCCGGCGCgauaUGCGcCGGAUu -3'
miRNA:   3'- cAUCGgUaCGGCCGCG----ACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 62564 0.69 0.671254
Target:  5'- -aAGCCGaGCC--CGCUGCGCGGAUc -3'
miRNA:   3'- caUCGGUaCGGccGCGACGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 66495 0.71 0.538494
Target:  5'- ---cCCGUGCCGGCGaugGCGCGGu-- -3'
miRNA:   3'- caucGGUACGGCCGCga-CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 66611 0.69 0.671254
Target:  5'- --cGCCGcguUGCCGGCGCcGuCGCGGc-- -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaC-GCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 68246 0.67 0.770448
Target:  5'- -aAGCCAUGCCcGCGCcGCggGCGGc-- -3'
miRNA:   3'- caUCGGUACGGcCGCGaCG--CGCUuau -5'
24341 5' -57.6 NC_005264.1 + 69850 0.7 0.609588
Target:  5'- --cGCUAcgGCCGGUGCUGCgGCGcGUGg -3'
miRNA:   3'- cauCGGUa-CGGCCGCGACG-CGCuUAU- -5'
24341 5' -57.6 NC_005264.1 + 77966 0.69 0.640451
Target:  5'- -gAGaCC-UGCCGGCGCcGCGCGu--- -3'
miRNA:   3'- caUC-GGuACGGCCGCGaCGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 79973 0.66 0.83637
Target:  5'- -cGGCCAgcaaacagagaccgaUGCCGGC-C-GCGCGGAa- -3'
miRNA:   3'- caUCGGU---------------ACGGCCGcGaCGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 87153 0.66 0.815958
Target:  5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3'
miRNA:   3'- cauCGGUacg--GCCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 89793 0.68 0.71183
Target:  5'- cUGGCCGcauaccGCCGGCGCUuuccGCGCuAGUGa -3'
miRNA:   3'- cAUCGGUa-----CGGCCGCGA----CGCGcUUAU- -5'
24341 5' -57.6 NC_005264.1 + 93290 0.69 0.671254
Target:  5'- aGUGGaggaAUGCCucaaGGCGCUGUGCGcAAUAa -3'
miRNA:   3'- -CAUCgg--UACGG----CCGCGACGCGC-UUAU- -5'
24341 5' -57.6 NC_005264.1 + 98035 0.68 0.701765
Target:  5'- -gAGCCcugcgcuuccgGUGCCcaugggGGCGCUGCGCGc--- -3'
miRNA:   3'- caUCGG-----------UACGG------CCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 100027 0.68 0.71183
Target:  5'- -aGGCCGcGgCGGCGCUGCuGCGu--- -3'
miRNA:   3'- caUCGGUaCgGCCGCGACG-CGCuuau -5'
24341 5' -57.6 NC_005264.1 + 102777 0.68 0.691642
Target:  5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3'
miRNA:   3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.