Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24341 | 5' | -57.6 | NC_005264.1 | + | 66495 | 0.71 | 0.538494 |
Target: 5'- ---cCCGUGCCGGCGaugGCGCGGu-- -3' miRNA: 3'- caucGGUACGGCCGCga-CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 40272 | 0.71 | 0.558583 |
Target: 5'- --cGCgGUG-CGGCGCUGCGUGAc-- -3' miRNA: 3'- cauCGgUACgGCCGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 2181 | 0.7 | 0.568707 |
Target: 5'- -cGGCCGuugccccuccauUGCCGGCGCccaUGCGCGc--- -3' miRNA: 3'- caUCGGU------------ACGGCCGCG---ACGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 20841 | 0.7 | 0.578876 |
Target: 5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3' miRNA: 3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 126098 | 0.69 | 0.619869 |
Target: 5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3' miRNA: 3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 138191 | 0.69 | 0.637364 |
Target: 5'- gGUGGCCAgaaCCGuggggauuaagcauGCGCUGCGCGGu-- -3' miRNA: 3'- -CAUCGGUac-GGC--------------CGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 66611 | 0.69 | 0.671254 |
Target: 5'- --cGCCGcguUGCCGGCGCcGuCGCGGc-- -3' miRNA: 3'- cauCGGU---ACGGCCGCGaC-GCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 62564 | 0.69 | 0.671254 |
Target: 5'- -aAGCCGaGCC--CGCUGCGCGGAUc -3' miRNA: 3'- caUCGGUaCGGccGCGACGCGCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 93290 | 0.69 | 0.671254 |
Target: 5'- aGUGGaggaAUGCCucaaGGCGCUGUGCGcAAUAa -3' miRNA: 3'- -CAUCgg--UACGG----CCGCGACGCGC-UUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 139438 | 0.69 | 0.661007 |
Target: 5'- gGUGGCCAUGUCGGCgGCgGUauaacucguucGCGAGa- -3' miRNA: 3'- -CAUCGGUACGGCCG-CGaCG-----------CGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 52204 | 0.69 | 0.650736 |
Target: 5'- -gGGCCGUGg-GGCGCggugGCGCGAGc- -3' miRNA: 3'- caUCGGUACggCCGCGa---CGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 77966 | 0.69 | 0.640451 |
Target: 5'- -gAGaCC-UGCCGGCGCcGCGCGu--- -3' miRNA: 3'- caUC-GGuACGGCCGCGaCGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 1164 | 0.67 | 0.760935 |
Target: 5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3' miRNA: 3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 42251 | 0.67 | 0.766657 |
Target: 5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3' miRNA: 3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 131720 | 0.66 | 0.815958 |
Target: 5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3' miRNA: 3'- caUCGguACGGCCGCGA---CGCGcuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 87153 | 0.66 | 0.815958 |
Target: 5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3' miRNA: 3'- cauCGGUacg--GCCGCGACGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 3752 | 0.66 | 0.824587 |
Target: 5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3' miRNA: 3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 56802 | 0.66 | 0.824587 |
Target: 5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3' miRNA: 3'- caUCGGUACGGc------CGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 126291 | 0.66 | 0.832203 |
Target: 5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3' miRNA: 3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 156065 | 1.06 | 0.002789 |
Target: 5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3' miRNA: 3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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