miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 66495 0.71 0.538494
Target:  5'- ---cCCGUGCCGGCGaugGCGCGGu-- -3'
miRNA:   3'- caucGGUACGGCCGCga-CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 40272 0.71 0.558583
Target:  5'- --cGCgGUG-CGGCGCUGCGUGAc-- -3'
miRNA:   3'- cauCGgUACgGCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 2181 0.7 0.568707
Target:  5'- -cGGCCGuugccccuccauUGCCGGCGCccaUGCGCGc--- -3'
miRNA:   3'- caUCGGU------------ACGGCCGCG---ACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 20841 0.7 0.578876
Target:  5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3'
miRNA:   3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 126098 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 138191 0.69 0.637364
Target:  5'- gGUGGCCAgaaCCGuggggauuaagcauGCGCUGCGCGGu-- -3'
miRNA:   3'- -CAUCGGUac-GGC--------------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 77966 0.69 0.640451
Target:  5'- -gAGaCC-UGCCGGCGCcGCGCGu--- -3'
miRNA:   3'- caUC-GGuACGGCCGCGaCGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 52204 0.69 0.650736
Target:  5'- -gGGCCGUGg-GGCGCggugGCGCGAGc- -3'
miRNA:   3'- caUCGGUACggCCGCGa---CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 139438 0.69 0.661007
Target:  5'- gGUGGCCAUGUCGGCgGCgGUauaacucguucGCGAGa- -3'
miRNA:   3'- -CAUCGGUACGGCCG-CGaCG-----------CGCUUau -5'
24341 5' -57.6 NC_005264.1 + 93290 0.69 0.671254
Target:  5'- aGUGGaggaAUGCCucaaGGCGCUGUGCGcAAUAa -3'
miRNA:   3'- -CAUCgg--UACGG----CCGCGACGCGC-UUAU- -5'
24341 5' -57.6 NC_005264.1 + 62564 0.69 0.671254
Target:  5'- -aAGCCGaGCC--CGCUGCGCGGAUc -3'
miRNA:   3'- caUCGGUaCGGccGCGACGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 66611 0.69 0.671254
Target:  5'- --cGCCGcguUGCCGGCGCcGuCGCGGc-- -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaC-GCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 98035 0.68 0.701765
Target:  5'- -gAGCCcugcgcuuccgGUGCCcaugggGGCGCUGCGCGc--- -3'
miRNA:   3'- caUCGG-----------UACGG------CCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 113390 0.68 0.691642
Target:  5'- -gGGUUAUGCaGGCgaGCUGCGCGAc-- -3'
miRNA:   3'- caUCGGUACGgCCG--CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 102777 0.68 0.691642
Target:  5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3'
miRNA:   3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 120733 0.69 0.640451
Target:  5'- -aGGaCgGUGCCGGCGaCUGCGaCGAc-- -3'
miRNA:   3'- caUC-GgUACGGCCGC-GACGC-GCUuau -5'
24341 5' -57.6 NC_005264.1 + 15581 0.69 0.640451
Target:  5'- cGUGGCCAagcuUGCgGGCGCaGCuGCGGc-- -3'
miRNA:   3'- -CAUCGGU----ACGgCCGCGaCG-CGCUuau -5'
24341 5' -57.6 NC_005264.1 + 7071 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 148446 0.69 0.619869
Target:  5'- gGUGGUCAgaacaGCCGGCGCc-CGCGAGg- -3'
miRNA:   3'- -CAUCGGUa----CGGCCGCGacGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 120284 0.7 0.609588
Target:  5'- -cGGCaaggcUGCCGGCGCgaagacGCGCGGAa- -3'
miRNA:   3'- caUCGgu---ACGGCCGCGa-----CGCGCUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.