miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 69850 0.7 0.609588
Target:  5'- --cGCUAcgGCCGGUGCUGCgGCGcGUGg -3'
miRNA:   3'- cauCGGUa-CGGCCGCGACG-CGCuUAU- -5'
24341 5' -57.6 NC_005264.1 + 158568 0.71 0.528543
Target:  5'- -cAGCCAUGCaGGCcgaacagacucGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGgCCG-----------CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 117611 0.71 0.518659
Target:  5'- -cGGCCAUGCCuaCGCUGCGCu---- -3'
miRNA:   3'- caUCGGUACGGccGCGACGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 114110 0.72 0.49912
Target:  5'- -gGGCCA-GUCGGCcCUGCcGCGAAUAa -3'
miRNA:   3'- caUCGGUaCGGCCGcGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 31836 0.72 0.478015
Target:  5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3'
miRNA:   3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 25606 0.72 0.461079
Target:  5'- --cGCCggGCCGGCGUUGCG-GAAc- -3'
miRNA:   3'- cauCGGuaCGGCCGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 103133 0.75 0.311745
Target:  5'- gGUAGCC--GCCGGCGCggcGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuaCGGCCGCGa--CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 156065 1.06 0.002789
Target:  5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3'
miRNA:   3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 140 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 79973 0.66 0.83637
Target:  5'- -cGGCCAgcaaacagagaccgaUGCCGGC-C-GCGCGGAa- -3'
miRNA:   3'- caUCGGU---------------ACGGCCGcGaCGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 126291 0.66 0.832203
Target:  5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3'
miRNA:   3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5'
24341 5' -57.6 NC_005264.1 + 56802 0.66 0.824587
Target:  5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGGc------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 3752 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 87153 0.66 0.815958
Target:  5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3'
miRNA:   3'- cauCGGUacg--GCCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 131720 0.66 0.815958
Target:  5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3'
miRNA:   3'- caUCGguACGGCCGCGA---CGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 42251 0.67 0.766657
Target:  5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3'
miRNA:   3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 1164 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 42361 0.68 0.71183
Target:  5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3'
miRNA:   3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 24956 0.68 0.721825
Target:  5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3'
miRNA:   3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 52971 0.68 0.721825
Target:  5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3'
miRNA:   3'- caUCGgUACGG---------CCGCgACGCGCUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.