miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 103133 0.75 0.311745
Target:  5'- gGUAGCC--GCCGGCGCggcGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuaCGGCCGCGa--CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 103952 0.67 0.741574
Target:  5'- --cGCUAUGCgcgaacgcgUGGCGCUGCGCa---- -3'
miRNA:   3'- cauCGGUACG---------GCCGCGACGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 113390 0.68 0.691642
Target:  5'- -gGGUUAUGCaGGCgaGCUGCGCGAc-- -3'
miRNA:   3'- caUCGGUACGgCCG--CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 114110 0.72 0.49912
Target:  5'- -gGGCCA-GUCGGCcCUGCcGCGAAUAa -3'
miRNA:   3'- caUCGGUaCGGCCGcGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 114989 0.67 0.760935
Target:  5'- -aGGCgCGUGCCGGCGCU-UGCa---- -3'
miRNA:   3'- caUCG-GUACGGCCGCGAcGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 117611 0.71 0.518659
Target:  5'- -cGGCCAUGCCuaCGCUGCGCu---- -3'
miRNA:   3'- caUCGGUACGGccGCGACGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 119167 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 120191 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 120284 0.7 0.609588
Target:  5'- -cGGCaaggcUGCCGGCGCgaagacGCGCGGAa- -3'
miRNA:   3'- caUCGgu---ACGGCCGCGa-----CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 120733 0.69 0.640451
Target:  5'- -aGGaCgGUGCCGGCGaCUGCGaCGAc-- -3'
miRNA:   3'- caUC-GgUACGGCCGC-GACGC-GCUuau -5'
24341 5' -57.6 NC_005264.1 + 122778 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 126098 0.69 0.619869
Target:  5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3'
miRNA:   3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5'
24341 5' -57.6 NC_005264.1 + 126291 0.66 0.832203
Target:  5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3'
miRNA:   3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5'
24341 5' -57.6 NC_005264.1 + 131720 0.66 0.815958
Target:  5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3'
miRNA:   3'- caUCGguACGGCCGCGA---CGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 137936 0.72 0.470449
Target:  5'- uUGGUgGUGCCGGUaucGUUGCGCGAc-- -3'
miRNA:   3'- cAUCGgUACGGCCG---CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 138191 0.69 0.637364
Target:  5'- gGUGGCCAgaaCCGuggggauuaagcauGCGCUGCGCGGu-- -3'
miRNA:   3'- -CAUCGGUac-GGC--------------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 139438 0.69 0.661007
Target:  5'- gGUGGCCAUGUCGGCgGCgGUauaacucguucGCGAGa- -3'
miRNA:   3'- -CAUCGGUACGGCCG-CGaCG-----------CGCUUau -5'
24341 5' -57.6 NC_005264.1 + 148446 0.69 0.619869
Target:  5'- gGUGGUCAgaacaGCCGGCGCc-CGCGAGg- -3'
miRNA:   3'- -CAUCGGUa----CGGCCGCGacGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 150862 0.72 0.478015
Target:  5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3'
miRNA:   3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 155718 0.68 0.721825
Target:  5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3'
miRNA:   3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.