miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 120733 0.69 0.640451
Target:  5'- -aGGaCgGUGCCGGCGaCUGCGaCGAc-- -3'
miRNA:   3'- caUC-GgUACGGCCGC-GACGC-GCUuau -5'
24341 5' -57.6 NC_005264.1 + 117611 0.71 0.518659
Target:  5'- -cGGCCAUGCCuaCGCUGCGCu---- -3'
miRNA:   3'- caUCGGUACGGccGCGACGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 102777 0.68 0.691642
Target:  5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3'
miRNA:   3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 36755 0.68 0.721825
Target:  5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3'
miRNA:   3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5'
24341 5' -57.6 NC_005264.1 + 158568 0.71 0.528543
Target:  5'- -cAGCCAUGCaGGCcgaacagacucGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGgCCG-----------CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 148446 0.69 0.619869
Target:  5'- gGUGGUCAgaacaGCCGGCGCc-CGCGAGg- -3'
miRNA:   3'- -CAUCGGUa----CGGCCGCGacGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 114110 0.72 0.49912
Target:  5'- -gGGCCA-GUCGGCcCUGCcGCGAAUAa -3'
miRNA:   3'- caUCGGUaCGGCCGcGACG-CGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 103133 0.75 0.311745
Target:  5'- gGUAGCC--GCCGGCGCggcGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuaCGGCCGCGa--CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 52971 0.68 0.721825
Target:  5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3'
miRNA:   3'- caUCGgUACGG---------CCGCgACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 24956 0.68 0.721825
Target:  5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3'
miRNA:   3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 48482 0.68 0.721825
Target:  5'- aGUAGCC---CCGcGCGUUGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuacGGC-CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 100027 0.68 0.71183
Target:  5'- -aGGCCGcGgCGGCGCUGCuGCGu--- -3'
miRNA:   3'- caUCGGUaCgGCCGCGACG-CGCuuau -5'
24341 5' -57.6 NC_005264.1 + 36692 0.68 0.721825
Target:  5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3'
miRNA:   3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 20841 0.7 0.578876
Target:  5'- --uGCCGcgGCauacgaCGGCGCUGCGCGAc-- -3'
miRNA:   3'- cauCGGUa-CG------GCCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 36127 0.66 0.815958
Target:  5'- -cGGCCGacgauuucuuUGCCcacguaGCGCUGUGCGAGc- -3'
miRNA:   3'- caUCGGU----------ACGGc-----CGCGACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 18098 0.67 0.789089
Target:  5'- --uGUUAUGCCGGCaGaugGCGCGAGa- -3'
miRNA:   3'- cauCGGUACGGCCG-Cga-CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 68246 0.67 0.770448
Target:  5'- -aAGCCAUGCCcGCGCcGCggGCGGc-- -3'
miRNA:   3'- caUCGGUACGGcCGCGaCG--CGCUuau -5'
24341 5' -57.6 NC_005264.1 + 55144 0.67 0.770448
Target:  5'- cGUGcGCUGUGCUGGCGCaGCGUa---- -3'
miRNA:   3'- -CAU-CGGUACGGCCGCGaCGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 62564 0.69 0.671254
Target:  5'- -aAGCCGaGCC--CGCUGCGCGGAUc -3'
miRNA:   3'- caUCGGUaCGGccGCGACGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 66611 0.69 0.671254
Target:  5'- --cGCCGcguUGCCGGCGCcGuCGCGGc-- -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaC-GCGCUuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.