Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24341 | 5' | -57.6 | NC_005264.1 | + | 79973 | 0.66 | 0.83637 |
Target: 5'- -cGGCCAgcaaacagagaccgaUGCCGGC-C-GCGCGGAa- -3' miRNA: 3'- caUCGGU---------------ACGGCCGcGaCGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 98035 | 0.68 | 0.701765 |
Target: 5'- -gAGCCcugcgcuuccgGUGCCcaugggGGCGCUGCGCGc--- -3' miRNA: 3'- caUCGG-----------UACGG------CCGCGACGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 102777 | 0.68 | 0.691642 |
Target: 5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3' miRNA: 3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 156065 | 1.06 | 0.002789 |
Target: 5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3' miRNA: 3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 87153 | 0.66 | 0.815958 |
Target: 5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3' miRNA: 3'- cauCGGUacg--GCCGCGACGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 131720 | 0.66 | 0.815958 |
Target: 5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3' miRNA: 3'- caUCGguACGGCCGCGA---CGCGcuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 1164 | 0.67 | 0.760935 |
Target: 5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3' miRNA: 3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 140 | 0.67 | 0.760935 |
Target: 5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3' miRNA: 3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 36755 | 0.68 | 0.721825 |
Target: 5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3' miRNA: 3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 42361 | 0.68 | 0.71183 |
Target: 5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3' miRNA: 3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 48482 | 0.68 | 0.721825 |
Target: 5'- aGUAGCC---CCGcGCGUUGCGCGGc-- -3' miRNA: 3'- -CAUCGGuacGGC-CGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 52971 | 0.68 | 0.721825 |
Target: 5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3' miRNA: 3'- caUCGgUACGG---------CCGCgACGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 126291 | 0.66 | 0.832203 |
Target: 5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3' miRNA: 3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 25222 | 0.68 | 0.721825 |
Target: 5'- gGUGGCCAgggcagUGCCGGCagaGUUGagGCGAGUu -3' miRNA: 3'- -CAUCGGU------ACGGCCG---CGACg-CGCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 56802 | 0.66 | 0.824587 |
Target: 5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3' miRNA: 3'- caUCGGUACGGc------CGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 24956 | 0.68 | 0.721825 |
Target: 5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3' miRNA: 3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 100027 | 0.68 | 0.71183 |
Target: 5'- -aGGCCGcGgCGGCGCUGCuGCGu--- -3' miRNA: 3'- caUCGGUaCgGCCGCGACG-CGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 113390 | 0.68 | 0.691642 |
Target: 5'- -gGGUUAUGCaGGCgaGCUGCGCGAc-- -3' miRNA: 3'- caUCGGUACGgCCG--CGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 3752 | 0.66 | 0.824587 |
Target: 5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3' miRNA: 3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 42251 | 0.67 | 0.766657 |
Target: 5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3' miRNA: 3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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