miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 79973 0.66 0.83637
Target:  5'- -cGGCCAgcaaacagagaccgaUGCCGGC-C-GCGCGGAa- -3'
miRNA:   3'- caUCGGU---------------ACGGCCGcGaCGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 98035 0.68 0.701765
Target:  5'- -gAGCCcugcgcuuccgGUGCCcaugggGGCGCUGCGCGc--- -3'
miRNA:   3'- caUCGG-----------UACGG------CCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 102777 0.68 0.691642
Target:  5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3'
miRNA:   3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 156065 1.06 0.002789
Target:  5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3'
miRNA:   3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5'
24341 5' -57.6 NC_005264.1 + 87153 0.66 0.815958
Target:  5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3'
miRNA:   3'- cauCGGUacg--GCCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 131720 0.66 0.815958
Target:  5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3'
miRNA:   3'- caUCGguACGGCCGCGA---CGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 1164 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 140 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 36755 0.68 0.721825
Target:  5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3'
miRNA:   3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5'
24341 5' -57.6 NC_005264.1 + 42361 0.68 0.71183
Target:  5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3'
miRNA:   3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 48482 0.68 0.721825
Target:  5'- aGUAGCC---CCGcGCGUUGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuacGGC-CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 52971 0.68 0.721825
Target:  5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3'
miRNA:   3'- caUCGgUACGG---------CCGCgACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 126291 0.66 0.832203
Target:  5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3'
miRNA:   3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5'
24341 5' -57.6 NC_005264.1 + 25222 0.68 0.721825
Target:  5'- gGUGGCCAgggcagUGCCGGCagaGUUGagGCGAGUu -3'
miRNA:   3'- -CAUCGGU------ACGGCCG---CGACg-CGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 56802 0.66 0.824587
Target:  5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGGc------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 24956 0.68 0.721825
Target:  5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3'
miRNA:   3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 100027 0.68 0.71183
Target:  5'- -aGGCCGcGgCGGCGCUGCuGCGu--- -3'
miRNA:   3'- caUCGGUaCgGCCGCGACG-CGCuuau -5'
24341 5' -57.6 NC_005264.1 + 113390 0.68 0.691642
Target:  5'- -gGGUUAUGCaGGCgaGCUGCGCGAc-- -3'
miRNA:   3'- caUCGGUACGgCCG--CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 3752 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 42251 0.67 0.766657
Target:  5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3'
miRNA:   3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.