Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 137354 | 0.66 | 0.974897 |
Target: 5'- -cAUCCU--AGCCucguucccGUACGC-CUGGCGc -3' miRNA: 3'- gaUAGGGauUCGG--------UAUGCGuGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 39211 | 0.66 | 0.977436 |
Target: 5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3' miRNA: 3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 158238 | 0.66 | 0.977436 |
Target: 5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3' miRNA: 3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 89125 | 0.66 | 0.977436 |
Target: 5'- ---aCCCgcgcaAGGCCGUcgGUACUGGCGc -3' miRNA: 3'- gauaGGGa----UUCGGUAugCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 102990 | 0.66 | 0.979327 |
Target: 5'- ---aCCgUGgcGGCCugcaccacguauUGCGCGCUGGCGu -3' miRNA: 3'- gauaGGgAU--UCGGu-----------AUGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 109055 | 0.66 | 0.98194 |
Target: 5'- -gAUCCCUGaccuggaacagcAGCCcaGCGaUugUGGCGa -3' miRNA: 3'- gaUAGGGAU------------UCGGuaUGC-GugACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 154597 | 0.66 | 0.98194 |
Target: 5'- ----gCCgcuGGCCAgacuaacCGCGCUGGCGu -3' miRNA: 3'- gauagGGau-UCGGUau-----GCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 95555 | 0.66 | 0.98194 |
Target: 5'- ---aCCCUucgAAGCCG-ACGCGCUaGCGc -3' miRNA: 3'- gauaGGGA---UUCGGUaUGCGUGAcCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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