Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 65714 | 0.7 | 0.882679 |
Target: 5'- cCUGUagCCCUugagcucagAGGCCAacuCGCGCUGGCc -3' miRNA: 3'- -GAUA--GGGA---------UUCGGUau-GCGUGACCGc -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 61411 | 0.74 | 0.691809 |
Target: 5'- -gAUCCCUaAAGCgAcaaccgGCGCGCUGGUGg -3' miRNA: 3'- gaUAGGGA-UUCGgUa-----UGCGUGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 55137 | 0.71 | 0.827079 |
Target: 5'- ---aCCCc--GCCGUGCGCuguGCUGGCGc -3' miRNA: 3'- gauaGGGauuCGGUAUGCG---UGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 39420 | 0.68 | 0.932272 |
Target: 5'- uUAUCUCgu-GCCAgacUACuaGCUGGCGg -3' miRNA: 3'- gAUAGGGauuCGGU---AUGcgUGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 39211 | 0.66 | 0.977436 |
Target: 5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3' miRNA: 3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 34060 | 0.81 | 0.320816 |
Target: 5'- uUAUCCCguuguggAAGCC--GCGCACUGGCGc -3' miRNA: 3'- gAUAGGGa------UUCGGuaUGCGUGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 12264 | 0.71 | 0.835642 |
Target: 5'- -cGUCCCUGAgaugacgauGCCGUAC-C-CUGGCGg -3' miRNA: 3'- gaUAGGGAUU---------CGGUAUGcGuGACCGC- -5' |
|||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 7719 | 0.66 | 0.974897 |
Target: 5'- --cUCCCUAacgcugcgcauGGCCAUAUGCAggguuaacaugcUUGGCc -3' miRNA: 3'- gauAGGGAU-----------UCGGUAUGCGU------------GACCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home