miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 95350 0.7 0.896551
Target:  5'- aAACGGA-CUCggcgGGGCGGCGGCc--- -3'
miRNA:   3'- gUUGCCUgGAGa---UCCGUCGCUGuuuc -5'
24343 3' -52.3 NC_005264.1 + 96258 0.66 0.98194
Target:  5'- cCAGCGaGAgCCUgUaccagcAGGUGGCGGCGGAGc -3'
miRNA:   3'- -GUUGC-CU-GGAgA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 98271 0.69 0.914937
Target:  5'- gCAAUGGACgUguucgcgCUGGGCAGCGugGu-- -3'
miRNA:   3'- -GUUGCCUGgA-------GAUCCGUCGCugUuuc -5'
24343 3' -52.3 NC_005264.1 + 98519 0.76 0.587235
Target:  5'- aCGGgGGGCCUCagucuuGGCAGCGGCAAc- -3'
miRNA:   3'- -GUUgCCUGGAGau----CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 100862 0.75 0.660568
Target:  5'- gCAugGGACC---AGGCGcGCGACGAGGg -3'
miRNA:   3'- -GUugCCUGGagaUCCGU-CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 105028 0.67 0.969205
Target:  5'- ---aGGACCUCgucGGGaCuGCGGCGAAa -3'
miRNA:   3'- guugCCUGGAGa--UCC-GuCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 107127 0.74 0.691809
Target:  5'- -cGCGGACUccugUCUAGGCGGCGAgCuGAGc -3'
miRNA:   3'- guUGCCUGG----AGAUCCGUCGCU-GuUUC- -5'
24343 3' -52.3 NC_005264.1 + 110851 0.66 0.983921
Target:  5'- cCGACGGuCCUCUcGGCgaagaucgAGCGugAGc- -3'
miRNA:   3'- -GUUGCCuGGAGAuCCG--------UCGCugUUuc -5'
24343 3' -52.3 NC_005264.1 + 112305 0.79 0.42912
Target:  5'- uCGACaGGCCUCUuGGCAGCG-CAGAGa -3'
miRNA:   3'- -GUUGcCUGGAGAuCCGUCGCuGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 113037 0.66 0.985732
Target:  5'- -cGCGG-CCgcgaCUGGGCcGCGGCGAu- -3'
miRNA:   3'- guUGCCuGGa---GAUCCGuCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 121526 0.69 0.910073
Target:  5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3'
miRNA:   3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5'
24343 3' -52.3 NC_005264.1 + 122702 0.69 0.915534
Target:  5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3'
miRNA:   3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 123298 0.76 0.587235
Target:  5'- -cGCGGgaACCgcgGGGCGGCGGCAGAGa -3'
miRNA:   3'- guUGCC--UGGagaUCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 123924 0.73 0.772092
Target:  5'- ---gGGACCgcggAGGCgAGCGACGAAGa -3'
miRNA:   3'- guugCCUGGaga-UCCG-UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 124969 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 125837 0.69 0.937348
Target:  5'- gGACGGucaggguguuGCCgg-AGGCGGCGGCGAc- -3'
miRNA:   3'- gUUGCC----------UGGagaUCCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 126513 0.68 0.954379
Target:  5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3'
miRNA:   3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 130258 0.71 0.867874
Target:  5'- uUAAgGGGCCUCUAGGCcaaucAGgGGCcGGGa -3'
miRNA:   3'- -GUUgCCUGGAGAUCCG-----UCgCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 130695 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 132651 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.