miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 37372 0.68 0.942175
Target:  5'- gAGCGaGCCUCcgagcaGGGC-GCGGCAGAGg -3'
miRNA:   3'- gUUGCcUGGAGa-----UCCGuCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 37573 0.66 0.977436
Target:  5'- gCGACGGAggcggcaagUCUCgcGGCGgccGCGGCGGGGg -3'
miRNA:   3'- -GUUGCCU---------GGAGauCCGU---CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 37784 0.66 0.979781
Target:  5'- ---aGGACUcg-AGGCgAGCGGCGGAGa -3'
miRNA:   3'- guugCCUGGagaUCCG-UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 38333 0.69 0.925848
Target:  5'- uGGCGGGCCcuggccgugaugCUGGGCGGCGGgGcGGu -3'
miRNA:   3'- gUUGCCUGGa-----------GAUCCGUCGCUgUuUC- -5'
24343 3' -52.3 NC_005264.1 + 38372 0.67 0.962648
Target:  5'- ---aGGACCUCcuccggcgAGaGCGGCGACGccGAGa -3'
miRNA:   3'- guugCCUGGAGa-------UC-CGUCGCUGU--UUC- -5'
24343 3' -52.3 NC_005264.1 + 39080 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5'
24343 3' -52.3 NC_005264.1 + 41014 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 43998 0.68 0.942175
Target:  5'- aGGCGGACU--UGGGCAGgGuCGAGGu -3'
miRNA:   3'- gUUGCCUGGagAUCCGUCgCuGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 48394 0.66 0.98194
Target:  5'- ---gGGGCgUC-GGGCGGCGGCcAGGa -3'
miRNA:   3'- guugCCUGgAGaUCCGUCGCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 55168 0.75 0.660568
Target:  5'- -uGCGG-CCUCUGGGC-GCGGCuGAAGg -3'
miRNA:   3'- guUGCCuGGAGAUCCGuCGCUG-UUUC- -5'
24343 3' -52.3 NC_005264.1 + 56437 0.69 0.908831
Target:  5'- -cGCGGugCUUgccgacgUAGGCGGCGuACAGAc -3'
miRNA:   3'- guUGCCugGAG-------AUCCGUCGC-UGUUUc -5'
24343 3' -52.3 NC_005264.1 + 69095 0.7 0.889734
Target:  5'- -cGCGGucgugGCCUCUAGGUccucgAGCGGCAc-- -3'
miRNA:   3'- guUGCC-----UGGAGAUCCG-----UCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 71607 0.72 0.791048
Target:  5'- --uUGGAagcCCUCaccggcgAGGCGGCGGCAGAGa -3'
miRNA:   3'- guuGCCU---GGAGa------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 79214 0.66 0.98194
Target:  5'- ---gGGGCUaggCUgcgugcAGGCGGCGGCGGGGg -3'
miRNA:   3'- guugCCUGGa--GA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 79301 0.67 0.962648
Target:  5'- -uGCGGACCgucGGGC-GCGACAu-- -3'
miRNA:   3'- guUGCCUGGagaUCCGuCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 79810 0.67 0.969205
Target:  5'- gCAACGaGGCCcCU--GCGGCGACGAAa -3'
miRNA:   3'- -GUUGC-CUGGaGAucCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 80282 0.66 0.979781
Target:  5'- uCAGCGGAgaUUaaagAGGCGGCcGCAAAGa -3'
miRNA:   3'- -GUUGCCUggAGa---UCCGUCGcUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 81884 0.66 0.985732
Target:  5'- uCGAUGGcGCCUU--GGCGGCGAUggGc -3'
miRNA:   3'- -GUUGCC-UGGAGauCCGUCGCUGuuUc -5'
24343 3' -52.3 NC_005264.1 + 83717 0.68 0.942175
Target:  5'- uGGCGG-CggCUAGGUacgcGGCGGCAGAGa -3'
miRNA:   3'- gUUGCCuGgaGAUCCG----UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 93709 0.67 0.972156
Target:  5'- -cGCGGGCCacagaUC-AGGCGGCaGACAAc- -3'
miRNA:   3'- guUGCCUGG-----AGaUCCGUCG-CUGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.