miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 2499 0.69 0.910073
Target:  5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3'
miRNA:   3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5'
24343 3' -52.3 NC_005264.1 + 2637 0.66 0.979781
Target:  5'- uCAGCGGGCagguugcgCUCU--GCAGCGGCAGc- -3'
miRNA:   3'- -GUUGCCUG--------GAGAucCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 3617 0.68 0.951087
Target:  5'- aCggUGGGCgCUgUGGGCGGgGugGGGGu -3'
miRNA:   3'- -GuuGCCUG-GAgAUCCGUCgCugUUUC- -5'
24343 3' -52.3 NC_005264.1 + 3675 0.69 0.915534
Target:  5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3'
miRNA:   3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 4271 0.76 0.587235
Target:  5'- -cGCGGgaACCgcgGGGCGGCGGCAGAGa -3'
miRNA:   3'- guUGCC--UGGagaUCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 4898 0.73 0.772092
Target:  5'- ---gGGACCgcggAGGCgAGCGACGAAGa -3'
miRNA:   3'- guugCCUGGaga-UCCG-UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 5943 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 6811 0.69 0.937348
Target:  5'- gGACGGucaggguguuGCCgg-AGGCGGCGGCGAc- -3'
miRNA:   3'- gUUGCC----------UGGagaUCCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 7486 0.68 0.954379
Target:  5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3'
miRNA:   3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 11231 0.71 0.867874
Target:  5'- uUAAgGGGCCUCUAGGCcaaucAGgGGCcGGGa -3'
miRNA:   3'- -GUUgCCUGGAGAUCCG-----UCgCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 11668 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 13624 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 16568 0.7 0.903125
Target:  5'- gGGCGGcGCCg--GGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCC-UGGagaUCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 16870 0.66 0.979781
Target:  5'- ----uGACCUUgucGGCGGCGGCAAAc -3'
miRNA:   3'- guugcCUGGAGau-CCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 21403 0.67 0.962297
Target:  5'- uCGAUGGagagggugGCCUCcgAGGUagaagaguacuugGGCGACAGAGa -3'
miRNA:   3'- -GUUGCC--------UGGAGa-UCCG-------------UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 21743 0.69 0.926944
Target:  5'- aGugGGGCCUUc-GGCGGCGGCc--- -3'
miRNA:   3'- gUugCCUGGAGauCCGUCGCUGuuuc -5'
24343 3' -52.3 NC_005264.1 + 24300 0.7 0.875391
Target:  5'- aCGGCGG-CCUCUGuGGCuacGCG-CAGAGa -3'
miRNA:   3'- -GUUGCCuGGAGAU-CCGu--CGCuGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 30835 0.66 0.979555
Target:  5'- gAACGGGCUcgcgucgUCgucGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCCUGG-------AGau-CCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 31141 0.75 0.650094
Target:  5'- gCGACGGACCcgugcgguUCUAGGUuucguGUGACGGGGg -3'
miRNA:   3'- -GUUGCCUGG--------AGAUCCGu----CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 36443 0.68 0.944036
Target:  5'- -cGCGGagacgacuuGCCUCUccucggcgaauccaaGGaGCAGCGGCAAGGc -3'
miRNA:   3'- guUGCC---------UGGAGA---------------UC-CGUCGCUGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.