Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 3' | -52.3 | NC_005264.1 | + | 154874 | 1.09 | 0.006338 |
Target: 5'- gCAACGGACCUCUAGGCAGCGACAAAGa -3' miRNA: 3'- -GUUGCCUGGAGAUCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 112305 | 0.79 | 0.42912 |
Target: 5'- uCGACaGGCCUCUuGGCAGCG-CAGAGa -3' miRNA: 3'- -GUUGcCUGGAGAuCCGUCGCuGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 123298 | 0.76 | 0.587235 |
Target: 5'- -cGCGGgaACCgcgGGGCGGCGGCAGAGa -3' miRNA: 3'- guUGCC--UGGagaUCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 4271 | 0.76 | 0.587235 |
Target: 5'- -cGCGGgaACCgcgGGGCGGCGGCAGAGa -3' miRNA: 3'- guUGCC--UGGagaUCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 98519 | 0.76 | 0.587235 |
Target: 5'- aCGGgGGGCCUCagucuuGGCAGCGGCAAc- -3' miRNA: 3'- -GUUgCCUGGAGau----CCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 150168 | 0.75 | 0.650094 |
Target: 5'- gCGACGGACCcgugcgguUCUAGGUuucguGUGACGGGGg -3' miRNA: 3'- -GUUGCCUGG--------AGAUCCGu----CGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 31141 | 0.75 | 0.650094 |
Target: 5'- gCGACGGACCcgugcgguUCUAGGUuucguGUGACGGGGg -3' miRNA: 3'- -GUUGCCUGG--------AGAUCCGu----CGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 55168 | 0.75 | 0.660568 |
Target: 5'- -uGCGG-CCUCUGGGC-GCGGCuGAAGg -3' miRNA: 3'- guUGCCuGGAGAUCCGuCGCUG-UUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 100862 | 0.75 | 0.660568 |
Target: 5'- gCAugGGACC---AGGCGcGCGACGAGGg -3' miRNA: 3'- -GUugCCUGGagaUCCGU-CGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 107127 | 0.74 | 0.691809 |
Target: 5'- -cGCGGACUccugUCUAGGCGGCGAgCuGAGc -3' miRNA: 3'- guUGCCUGG----AGAUCCGUCGCU-GuUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 123924 | 0.73 | 0.772092 |
Target: 5'- ---gGGACCgcggAGGCgAGCGACGAAGa -3' miRNA: 3'- guugCCUGGaga-UCCG-UCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 4898 | 0.73 | 0.772092 |
Target: 5'- ---gGGACCgcggAGGCgAGCGACGAAGa -3' miRNA: 3'- guugCCUGGaga-UCCG-UCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 71607 | 0.72 | 0.791048 |
Target: 5'- --uUGGAagcCCUCaccggcgAGGCGGCGGCAGAGa -3' miRNA: 3'- guuGCCU---GGAGa------UCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 135660 | 0.71 | 0.852177 |
Target: 5'- -cACGGACCUCUGGaGCuGCGGg---- -3' miRNA: 3'- guUGCCUGGAGAUC-CGuCGCUguuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 11231 | 0.71 | 0.867874 |
Target: 5'- uUAAgGGGCCUCUAGGCcaaucAGgGGCcGGGa -3' miRNA: 3'- -GUUgCCUGGAGAUCCG-----UCgCUGuUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 130258 | 0.71 | 0.867874 |
Target: 5'- uUAAgGGGCCUCUAGGCcaaucAGgGGCcGGGa -3' miRNA: 3'- -GUUgCCUGGAGAUCCG-----UCgCUGuUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 136246 | 0.7 | 0.875391 |
Target: 5'- gCGACGGACacggCUCaUGGGuUAGCGGCGAAa -3' miRNA: 3'- -GUUGCCUG----GAG-AUCC-GUCGCUGUUUc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 24300 | 0.7 | 0.875391 |
Target: 5'- aCGGCGG-CCUCUGuGGCuacGCG-CAGAGa -3' miRNA: 3'- -GUUGCCuGGAGAU-CCGu--CGCuGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 69095 | 0.7 | 0.889734 |
Target: 5'- -cGCGGucgugGCCUCUAGGUccucgAGCGGCAc-- -3' miRNA: 3'- guUGCC-----UGGAGAUCCG-----UCGCUGUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 95350 | 0.7 | 0.896551 |
Target: 5'- aAACGGA-CUCggcgGGGCGGCGGCc--- -3' miRNA: 3'- gUUGCCUgGAGa---UCCGUCGCUGuuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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