miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 81884 0.66 0.985732
Target:  5'- uCGAUGGcGCCUU--GGCGGCGAUggGc -3'
miRNA:   3'- -GUUGCC-UGGAGauCCGUCGCUGuuUc -5'
24343 3' -52.3 NC_005264.1 + 113037 0.66 0.985732
Target:  5'- -cGCGG-CCgcgaCUGGGCcGCGGCGAu- -3'
miRNA:   3'- guUGCCuGGa---GAUCCGuCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 110851 0.66 0.983921
Target:  5'- cCGACGGuCCUCUcGGCgaagaucgAGCGugAGc- -3'
miRNA:   3'- -GUUGCCuGGAGAuCCG--------UCGCugUUuc -5'
24343 3' -52.3 NC_005264.1 + 153507 0.66 0.983921
Target:  5'- aCGGCGGccGCCcCU-GGCGGgGACGAAc -3'
miRNA:   3'- -GUUGCC--UGGaGAuCCGUCgCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 48394 0.66 0.98194
Target:  5'- ---gGGGCgUC-GGGCGGCGGCcAGGa -3'
miRNA:   3'- guugCCUGgAGaUCCGUCGCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 150690 0.66 0.98194
Target:  5'- aGACGaGACCcagCaacGGGCAGCGccgGCGGAGg -3'
miRNA:   3'- gUUGC-CUGGa--Ga--UCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 79214 0.66 0.98194
Target:  5'- ---gGGGCUaggCUgcgugcAGGCGGCGGCGGGGg -3'
miRNA:   3'- guugCCUGGa--GA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 96258 0.66 0.98194
Target:  5'- cCAGCGaGAgCCUgUaccagcAGGUGGCGGCGGAGc -3'
miRNA:   3'- -GUUGC-CU-GGAgA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 2637 0.66 0.979781
Target:  5'- uCAGCGGGCagguugcgCUCU--GCAGCGGCAGc- -3'
miRNA:   3'- -GUUGCCUG--------GAGAucCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 37784 0.66 0.979781
Target:  5'- ---aGGACUcg-AGGCgAGCGGCGGAGa -3'
miRNA:   3'- guugCCUGGagaUCCG-UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 80282 0.66 0.979781
Target:  5'- uCAGCGGAgaUUaaagAGGCGGCcGCAAAGa -3'
miRNA:   3'- -GUUGCCUggAGa---UCCGUCGcUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 158107 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5'
24343 3' -52.3 NC_005264.1 + 16870 0.66 0.979781
Target:  5'- ----uGACCUUgucGGCGGCGGCAAAc -3'
miRNA:   3'- guugcCUGGAGau-CCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 39080 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5'
24343 3' -52.3 NC_005264.1 + 149861 0.66 0.979555
Target:  5'- gAACGGGCUcgcgucgUCgucGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCCUGG-------AGau-CCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 30835 0.66 0.979555
Target:  5'- gAACGGGCUcgcgucgUCgucGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCCUGG-------AGau-CCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 158751 0.66 0.978397
Target:  5'- -cAUGGAUCuUCUGGGCGacauggggccucccuGCGACAuAGa -3'
miRNA:   3'- guUGCCUGG-AGAUCCGU---------------CGCUGUuUC- -5'
24343 3' -52.3 NC_005264.1 + 156600 0.66 0.977436
Target:  5'- gCGACGGAggcggcaagUCUCgcGGCGgccGCGGCGGGGg -3'
miRNA:   3'- -GUUGCCU---------GGAGauCCGU---CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 37573 0.66 0.977436
Target:  5'- gCGACGGAggcggcaagUCUCgcGGCGgccGCGGCGGGGg -3'
miRNA:   3'- -GUUGCCU---------GGAGauCCGU---CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 130695 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.