miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 160041 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 130695 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 11668 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 93709 0.67 0.972156
Target:  5'- -cGCGGGCCacagaUC-AGGCGGCaGACAAc- -3'
miRNA:   3'- guUGCCUGG-----AGaUCCGUCG-CUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 79810 0.67 0.969205
Target:  5'- gCAACGaGGCCcCU--GCGGCGACGAAa -3'
miRNA:   3'- -GUUGC-CUGGaGAucCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 105028 0.67 0.969205
Target:  5'- ---aGGACCUCgucGGGaCuGCGGCGAAa -3'
miRNA:   3'- guugCCUGGAGa--UCC-GuCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 124969 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 157399 0.67 0.962648
Target:  5'- ---aGGACCUCcuccggcgAGaGCGGCGACGccGAGa -3'
miRNA:   3'- guugCCUGGAGa-------UC-CGUCGCUGU--UUC- -5'
24343 3' -52.3 NC_005264.1 + 161998 0.67 0.962648
Target:  5'- aGGCGGAUCgugGGGCAcGCcagaGACAGAGg -3'
miRNA:   3'- gUUGCCUGGagaUCCGU-CG----CUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 155447 0.67 0.962648
Target:  5'- aCGACGGcGCCg--GGGCcGCGAuCGAAGa -3'
miRNA:   3'- -GUUGCC-UGGagaUCCGuCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 38372 0.67 0.962648
Target:  5'- ---aGGACCUCcuccggcgAGaGCGGCGACGccGAGa -3'
miRNA:   3'- guugCCUGGAGa-------UC-CGUCGCUGU--UUC- -5'
24343 3' -52.3 NC_005264.1 + 5943 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 79301 0.67 0.962648
Target:  5'- -uGCGGACCgucGGGC-GCGACAu-- -3'
miRNA:   3'- guUGCCUGGagaUCCGuCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 21403 0.67 0.962297
Target:  5'- uCGAUGGagagggugGCCUCcgAGGUagaagaguacuugGGCGACAGAGa -3'
miRNA:   3'- -GUUGCC--------UGGAGa-UCCG-------------UCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 13624 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 132651 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 143045 0.68 0.955178
Target:  5'- uCGACGcAUUUCUugcGGGCAGCGGCAccGg -3'
miRNA:   3'- -GUUGCcUGGAGA---UCCGUCGCUGUuuC- -5'
24343 3' -52.3 NC_005264.1 + 7486 0.68 0.954379
Target:  5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3'
miRNA:   3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 126513 0.68 0.954379
Target:  5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3'
miRNA:   3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 3617 0.68 0.951087
Target:  5'- aCggUGGGCgCUgUGGGCGGgGugGGGGu -3'
miRNA:   3'- -GuuGCCUG-GAgAUCCGUCgCugUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.