Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 3' | -52.3 | NC_005264.1 | + | 36443 | 0.68 | 0.944036 |
Target: 5'- -cGCGGagacgacuuGCCUCUccucggcgaauccaaGGaGCAGCGGCAAGGc -3' miRNA: 3'- guUGCC---------UGGAGA---------------UC-CGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 83717 | 0.68 | 0.942175 |
Target: 5'- uGGCGG-CggCUAGGUacgcGGCGGCAGAGa -3' miRNA: 3'- gUUGCCuGgaGAUCCG----UCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 43998 | 0.68 | 0.942175 |
Target: 5'- aGGCGGACU--UGGGCAGgGuCGAGGu -3' miRNA: 3'- gUUGCCUGGagAUCCGUCgCuGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 37372 | 0.68 | 0.942175 |
Target: 5'- gAGCGaGCCUCcgagcaGGGC-GCGGCAGAGg -3' miRNA: 3'- gUUGCcUGGAGa-----UCCGuCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 6811 | 0.69 | 0.937348 |
Target: 5'- gGACGGucaggguguuGCCgg-AGGCGGCGGCGAc- -3' miRNA: 3'- gUUGCC----------UGGagaUCCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 125837 | 0.69 | 0.937348 |
Target: 5'- gGACGGucaggguguuGCCgg-AGGCGGCGGCGAc- -3' miRNA: 3'- gUUGCC----------UGGagaUCCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 141467 | 0.69 | 0.932272 |
Target: 5'- gCGGCGGgGCCUCUuuccaccggccgAGGCGGCccggGACGAAc -3' miRNA: 3'- -GUUGCC-UGGAGA------------UCCGUCG----CUGUUUc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 21743 | 0.69 | 0.926944 |
Target: 5'- aGugGGGCCUUc-GGCGGCGGCc--- -3' miRNA: 3'- gUugCCUGGAGauCCGUCGCUGuuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 157360 | 0.69 | 0.925848 |
Target: 5'- uGGCGGGCCcuggccgugaugCUGGGCGGCGGgGcGGu -3' miRNA: 3'- gUUGCCUGGa-----------GAUCCGUCGCUgUuUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 38333 | 0.69 | 0.925848 |
Target: 5'- uGGCGGGCCcuggccgugaugCUGGGCGGCGGgGcGGu -3' miRNA: 3'- gUUGCCUGGa-----------GAUCCGUCGCUgUuUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 122702 | 0.69 | 0.915534 |
Target: 5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3' miRNA: 3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 3675 | 0.69 | 0.915534 |
Target: 5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3' miRNA: 3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 98271 | 0.69 | 0.914937 |
Target: 5'- gCAAUGGACgUguucgcgCUGGGCAGCGugGu-- -3' miRNA: 3'- -GUUGCCUGgA-------GAUCCGUCGCugUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 121526 | 0.69 | 0.910073 |
Target: 5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3' miRNA: 3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 2499 | 0.69 | 0.910073 |
Target: 5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3' miRNA: 3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 56437 | 0.69 | 0.908831 |
Target: 5'- -cGCGGugCUUgccgacgUAGGCGGCGuACAGAc -3' miRNA: 3'- guUGCCugGAG-------AUCCGUCGC-UGUUUc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 16568 | 0.7 | 0.903125 |
Target: 5'- gGGCGGcGCCg--GGGCGGCGGCGc-- -3' miRNA: 3'- gUUGCC-UGGagaUCCGUCGCUGUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 95350 | 0.7 | 0.896551 |
Target: 5'- aAACGGA-CUCggcgGGGCGGCGGCc--- -3' miRNA: 3'- gUUGCCUgGAGa---UCCGUCGCUGuuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 69095 | 0.7 | 0.889734 |
Target: 5'- -cGCGGucgugGCCUCUAGGUccucgAGCGGCAc-- -3' miRNA: 3'- guUGCC-----UGGAGAUCCG-----UCGCUGUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 136246 | 0.7 | 0.875391 |
Target: 5'- gCGACGGACacggCUCaUGGGuUAGCGGCGAAa -3' miRNA: 3'- -GUUGCCUG----GAG-AUCC-GUCGCUGUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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