miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 161998 0.67 0.962648
Target:  5'- aGGCGGAUCgugGGGCAcGCcagaGACAGAGg -3'
miRNA:   3'- gUUGCCUGGagaUCCGU-CG----CUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 160041 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 158751 0.66 0.978397
Target:  5'- -cAUGGAUCuUCUGGGCGacauggggccucccuGCGACAuAGa -3'
miRNA:   3'- guUGCCUGG-AGAUCCGU---------------CGCUGUuUC- -5'
24343 3' -52.3 NC_005264.1 + 158107 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5'
24343 3' -52.3 NC_005264.1 + 157399 0.67 0.962648
Target:  5'- ---aGGACCUCcuccggcgAGaGCGGCGACGccGAGa -3'
miRNA:   3'- guugCCUGGAGa-------UC-CGUCGCUGU--UUC- -5'
24343 3' -52.3 NC_005264.1 + 157360 0.69 0.925848
Target:  5'- uGGCGGGCCcuggccgugaugCUGGGCGGCGGgGcGGu -3'
miRNA:   3'- gUUGCCUGGa-----------GAUCCGUCGCUgUuUC- -5'
24343 3' -52.3 NC_005264.1 + 156600 0.66 0.977436
Target:  5'- gCGACGGAggcggcaagUCUCgcGGCGgccGCGGCGGGGg -3'
miRNA:   3'- -GUUGCCU---------GGAGauCCGU---CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 155447 0.67 0.962648
Target:  5'- aCGACGGcGCCg--GGGCcGCGAuCGAAGa -3'
miRNA:   3'- -GUUGCC-UGGagaUCCGuCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 154874 1.09 0.006338
Target:  5'- gCAACGGACCUCUAGGCAGCGACAAAGa -3'
miRNA:   3'- -GUUGCCUGGAGAUCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 153507 0.66 0.983921
Target:  5'- aCGGCGGccGCCcCU-GGCGGgGACGAAc -3'
miRNA:   3'- -GUUGCC--UGGaGAuCCGUCgCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 150690 0.66 0.98194
Target:  5'- aGACGaGACCcagCaacGGGCAGCGccgGCGGAGg -3'
miRNA:   3'- gUUGC-CUGGa--Ga--UCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 150168 0.75 0.650094
Target:  5'- gCGACGGACCcgugcgguUCUAGGUuucguGUGACGGGGg -3'
miRNA:   3'- -GUUGCCUGG--------AGAUCCGu----CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 149861 0.66 0.979555
Target:  5'- gAACGGGCUcgcgucgUCgucGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCCUGG-------AGau-CCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 143045 0.68 0.955178
Target:  5'- uCGACGcAUUUCUugcGGGCAGCGGCAccGg -3'
miRNA:   3'- -GUUGCcUGGAGA---UCCGUCGCUGUuuC- -5'
24343 3' -52.3 NC_005264.1 + 141467 0.69 0.932272
Target:  5'- gCGGCGGgGCCUCUuuccaccggccgAGGCGGCccggGACGAAc -3'
miRNA:   3'- -GUUGCC-UGGAGA------------UCCGUCG----CUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 136246 0.7 0.875391
Target:  5'- gCGACGGACacggCUCaUGGGuUAGCGGCGAAa -3'
miRNA:   3'- -GUUGCCUG----GAG-AUCC-GUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 135660 0.71 0.852177
Target:  5'- -cACGGACCUCUGGaGCuGCGGg---- -3'
miRNA:   3'- guUGCCUGGAGAUC-CGuCGCUguuuc -5'
24343 3' -52.3 NC_005264.1 + 132651 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 130695 0.67 0.974897
Target:  5'- aAGCGG-CCUCUAGGCcaauGgGAUGAu- -3'
miRNA:   3'- gUUGCCuGGAGAUCCGu---CgCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 130258 0.71 0.867874
Target:  5'- uUAAgGGGCCUCUAGGCcaaucAGgGGCcGGGa -3'
miRNA:   3'- -GUUgCCUGGAGAUCCG-----UCgCUGuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.