Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 3' | -52.3 | NC_005264.1 | + | 126513 | 0.68 | 0.954379 |
Target: 5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3' miRNA: 3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 125837 | 0.69 | 0.937348 |
Target: 5'- gGACGGucaggguguuGCCgg-AGGCGGCGGCGAc- -3' miRNA: 3'- gUUGCC----------UGGagaUCCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 124969 | 0.67 | 0.962648 |
Target: 5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3' miRNA: 3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 123924 | 0.73 | 0.772092 |
Target: 5'- ---gGGACCgcggAGGCgAGCGACGAAGa -3' miRNA: 3'- guugCCUGGaga-UCCG-UCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 123298 | 0.76 | 0.587235 |
Target: 5'- -cGCGGgaACCgcgGGGCGGCGGCAGAGa -3' miRNA: 3'- guUGCC--UGGagaUCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 122702 | 0.69 | 0.915534 |
Target: 5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3' miRNA: 3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 121526 | 0.69 | 0.910073 |
Target: 5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3' miRNA: 3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 113037 | 0.66 | 0.985732 |
Target: 5'- -cGCGG-CCgcgaCUGGGCcGCGGCGAu- -3' miRNA: 3'- guUGCCuGGa---GAUCCGuCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 112305 | 0.79 | 0.42912 |
Target: 5'- uCGACaGGCCUCUuGGCAGCG-CAGAGa -3' miRNA: 3'- -GUUGcCUGGAGAuCCGUCGCuGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 110851 | 0.66 | 0.983921 |
Target: 5'- cCGACGGuCCUCUcGGCgaagaucgAGCGugAGc- -3' miRNA: 3'- -GUUGCCuGGAGAuCCG--------UCGCugUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 107127 | 0.74 | 0.691809 |
Target: 5'- -cGCGGACUccugUCUAGGCGGCGAgCuGAGc -3' miRNA: 3'- guUGCCUGG----AGAUCCGUCGCU-GuUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 105028 | 0.67 | 0.969205 |
Target: 5'- ---aGGACCUCgucGGGaCuGCGGCGAAa -3' miRNA: 3'- guugCCUGGAGa--UCC-GuCGCUGUUUc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 100862 | 0.75 | 0.660568 |
Target: 5'- gCAugGGACC---AGGCGcGCGACGAGGg -3' miRNA: 3'- -GUugCCUGGagaUCCGU-CGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 98519 | 0.76 | 0.587235 |
Target: 5'- aCGGgGGGCCUCagucuuGGCAGCGGCAAc- -3' miRNA: 3'- -GUUgCCUGGAGau----CCGUCGCUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 98271 | 0.69 | 0.914937 |
Target: 5'- gCAAUGGACgUguucgcgCUGGGCAGCGugGu-- -3' miRNA: 3'- -GUUGCCUGgA-------GAUCCGUCGCugUuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 96258 | 0.66 | 0.98194 |
Target: 5'- cCAGCGaGAgCCUgUaccagcAGGUGGCGGCGGAGc -3' miRNA: 3'- -GUUGC-CU-GGAgA------UCCGUCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 95350 | 0.7 | 0.896551 |
Target: 5'- aAACGGA-CUCggcgGGGCGGCGGCc--- -3' miRNA: 3'- gUUGCCUgGAGa---UCCGUCGCUGuuuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 93709 | 0.67 | 0.972156 |
Target: 5'- -cGCGGGCCacagaUC-AGGCGGCaGACAAc- -3' miRNA: 3'- guUGCCUGG-----AGaUCCGUCG-CUGUUuc -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 83717 | 0.68 | 0.942175 |
Target: 5'- uGGCGG-CggCUAGGUacgcGGCGGCAGAGa -3' miRNA: 3'- gUUGCCuGgaGAUCCG----UCGCUGUUUC- -5' |
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24343 | 3' | -52.3 | NC_005264.1 | + | 81884 | 0.66 | 0.985732 |
Target: 5'- uCGAUGGcGCCUU--GGCGGCGAUggGc -3' miRNA: 3'- -GUUGCC-UGGAGauCCGUCGCUGuuUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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