miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 37659 0.7 0.596504
Target:  5'- aUCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cGGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 33941 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 45756 0.7 0.586807
Target:  5'- uGCCauaGGACcccuGCGCG-GGGCGCGCGg -3'
miRNA:   3'- -CGGca-CCUGc---UGCGCaCCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 114282 0.7 0.577139
Target:  5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3'
miRNA:   3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 99987 0.7 0.567508
Target:  5'- cUCGUGGACGAgGCGacGAaaCGCGaCGCg -3'
miRNA:   3'- cGGCACCUGCUgCGCacCU--GCGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 87578 0.7 0.567508
Target:  5'- cGCCGacgaGGACGaacacgGCGCGUGGuCGCGUu- -3'
miRNA:   3'- -CGGCa---CCUGC------UGCGCACCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 25958 0.71 0.557917
Target:  5'- ----aGGACGGCGC--GGACGUGUGCa -3'
miRNA:   3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 58267 0.71 0.548373
Target:  5'- cCCGUGGGCGGCaugGCGcu--UGCGCGCa -3'
miRNA:   3'- cGGCACCUGCUG---CGCaccuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 45036 0.71 0.53888
Target:  5'- gGCaggaUGGACGGCGaCGaGGAUGCcGCGCa -3'
miRNA:   3'- -CGgc--ACCUGCUGC-GCaCCUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 67270 0.71 0.52007
Target:  5'- cGCUGUGGuauagACGACGCGaaUGGGCGgGUa- -3'
miRNA:   3'- -CGGCACC-----UGCUGCGC--ACCUGCgCGcg -5'
24343 5' -59.7 NC_005264.1 + 158474 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 39447 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 140552 0.72 0.501523
Target:  5'- gGCUG-GGAUGGCagaaGGGCGCGCGCg -3'
miRNA:   3'- -CGGCaCCUGCUGcgcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 42518 0.72 0.500603
Target:  5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3'
miRNA:   3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 8296 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 127323 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 40248 0.73 0.439126
Target:  5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3'
miRNA:   3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 154948 0.73 0.439126
Target:  5'- -gCGUGGGgGACGuCGU--ACGCGCGCa -3'
miRNA:   3'- cgGCACCUgCUGC-GCAccUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 248 0.73 0.439126
Target:  5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3'
miRNA:   3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 120788 0.73 0.430575
Target:  5'- cGCCGcGGGCaACGCGauUGGAuaggcCGCGUGCg -3'
miRNA:   3'- -CGGCaCCUGcUGCGC--ACCU-----GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.