Results 61 - 80 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 52827 | 0.69 | 0.671483 |
Target: 5'- aCCGUGGuaaucaugcacaguGCuACGCG-GGAgcUGCGCGCa -3' miRNA: 3'- cGGCACC--------------UGcUGCGCaCCU--GCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 91892 | 0.69 | 0.654963 |
Target: 5'- --gGUGGuuggccGCGGCaGCGaUGGGCGgGCGCg -3' miRNA: 3'- cggCACC------UGCUG-CGC-ACCUGCgCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 43788 | 0.69 | 0.652042 |
Target: 5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3' miRNA: 3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 162814 | 0.69 | 0.652042 |
Target: 5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3' miRNA: 3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 103952 | 0.69 | 0.64522 |
Target: 5'- cGCUaUGcGCGaACGCGUGG-CGCuGCGCa -3' miRNA: 3'- -CGGcACcUGC-UGCGCACCuGCG-CGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 156686 | 0.69 | 0.64522 |
Target: 5'- -aCGUGcacGCGAUGCGcgacGGGCGCGCGg -3' miRNA: 3'- cgGCACc--UGCUGCGCa---CCUGCGCGCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 124306 | 0.69 | 0.644246 |
Target: 5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3' miRNA: 3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 5279 | 0.69 | 0.644246 |
Target: 5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3' miRNA: 3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 53208 | 0.69 | 0.635469 |
Target: 5'- -aCGUGGcCGAgGUaGUGGACGCGUa- -3' miRNA: 3'- cgGCACCuGCUgCG-CACCUGCGCGcg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 95357 | 0.69 | 0.632542 |
Target: 5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3' miRNA: 3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 150986 | 0.69 | 0.625714 |
Target: 5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3' miRNA: 3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 31959 | 0.69 | 0.625714 |
Target: 5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3' miRNA: 3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 97525 | 0.7 | 0.615965 |
Target: 5'- uGCCGcGGcUGugGCGUGG-CaGCGgGCa -3' miRNA: 3'- -CGGCaCCuGCugCGCACCuG-CGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 139809 | 0.7 | 0.615965 |
Target: 5'- uGCCGUcGGcCGuCGCG-GGACGaaaCGCGUa -3' miRNA: 3'- -CGGCA-CCuGCuGCGCaCCUGC---GCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 3296 | 0.7 | 0.615965 |
Target: 5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3' miRNA: 3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 19428 | 0.7 | 0.606226 |
Target: 5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3' miRNA: 3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 49596 | 0.7 | 0.606226 |
Target: 5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3' miRNA: 3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 14038 | 0.7 | 0.606226 |
Target: 5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3' miRNA: 3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 152968 | 0.7 | 0.596504 |
Target: 5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3' miRNA: 3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 52205 | 0.7 | 0.596504 |
Target: 5'- gGCCGUGG--GGCGC--GGugGCGCGa -3' miRNA: 3'- -CGGCACCugCUGCGcaCCugCGCGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home