miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 138324 0.67 0.740995
Target:  5'- aGuuGUGGucAUGGCGCGUGcGCGacaagGCGCc -3'
miRNA:   3'- -CggCACC--UGCUGCGCACcUGCg----CGCG- -5'
24343 5' -59.7 NC_005264.1 + 93823 0.68 0.731675
Target:  5'- cGCCGUGGcacaguACGAUgGCGacagGGcCGCGgGCc -3'
miRNA:   3'- -CGGCACC------UGCUG-CGCa---CCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 131977 0.68 0.731675
Target:  5'- cGCCGUugccuaccGGGCGGCGCGccgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac------CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 157050 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 38023 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 84320 0.68 0.727925
Target:  5'- aCCG-GGcACGGCGCGaUGGuuacuggccucacCGCGUGCa -3'
miRNA:   3'- cGGCaCC-UGCUGCGC-ACCu------------GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 87040 0.68 0.722277
Target:  5'- cGCCuacGGACGGCGaCGaccUGGAgGCgaGCGCg -3'
miRNA:   3'- -CGGca-CCUGCUGC-GC---ACCUgCG--CGCG- -5'
24343 5' -59.7 NC_005264.1 + 149637 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 30610 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 86154 0.68 0.703279
Target:  5'- aCgGUGGGCGACaGCcUGGugGC-CGUg -3'
miRNA:   3'- cGgCACCUGCUG-CGcACCugCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 37241 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 22180 0.68 0.703279
Target:  5'- gGCCGUGGuuGGuuCGUauccaucuGUGG-CGUGCGCg -3'
miRNA:   3'- -CGGCACCugCU--GCG--------CACCuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 156268 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 12951 0.68 0.693694
Target:  5'- cGCCGUugccuaccGGGCGGCGCGcgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac-----CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 17334 0.68 0.687919
Target:  5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3'
miRNA:   3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 15430 0.68 0.684062
Target:  5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3'
miRNA:   3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154817 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 15369 0.68 0.684062
Target:  5'- cCCGUucgGGAgCGACGCGaUGGugGaGUGCc -3'
miRNA:   3'- cGGCA---CCU-GCUGCGC-ACCugCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 35791 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 112255 0.68 0.683096
Target:  5'- cGCCG-GGcugcucaGCGcCGCGUGcGcuucccgcACGCGCGCg -3'
miRNA:   3'- -CGGCaCC-------UGCuGCGCAC-C--------UGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.