miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 52205 0.7 0.596504
Target:  5'- gGCCGUGG--GGCGC--GGugGCGCGa -3'
miRNA:   3'- -CGGCACCugCUGCGcaCCugCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 162814 0.69 0.652042
Target:  5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3'
miRNA:   3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 156686 0.69 0.64522
Target:  5'- -aCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cgGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 103952 0.69 0.64522
Target:  5'- cGCUaUGcGCGaACGCGUGG-CGCuGCGCa -3'
miRNA:   3'- -CGGcACcUGC-UGCGCACCuGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 124306 0.69 0.644246
Target:  5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3'
miRNA:   3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 95357 0.69 0.632542
Target:  5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3'
miRNA:   3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5'
24343 5' -59.7 NC_005264.1 + 150986 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 3296 0.7 0.615965
Target:  5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3'
miRNA:   3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 49596 0.7 0.606226
Target:  5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3'
miRNA:   3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5'
24343 5' -59.7 NC_005264.1 + 19428 0.7 0.606226
Target:  5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3'
miRNA:   3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 14038 0.7 0.606226
Target:  5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3'
miRNA:   3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 152968 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 87625 0.66 0.811778
Target:  5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3'
miRNA:   3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 92043 0.66 0.820038
Target:  5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3'
miRNA:   3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 29274 0.66 0.828143
Target:  5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3'
miRNA:   3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31467 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 96227 0.66 0.828143
Target:  5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3'
miRNA:   3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 101587 0.66 0.828143
Target:  5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3'
miRNA:   3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 151852 0.66 0.828143
Target:  5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3'
miRNA:   3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 154908 1.13 0.00097
Target:  5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3'
miRNA:   3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.