Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 95357 | 0.69 | 0.632542 |
Target: 5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3' miRNA: 3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 150986 | 0.69 | 0.625714 |
Target: 5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3' miRNA: 3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 42518 | 0.72 | 0.500603 |
Target: 5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3' miRNA: 3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 127323 | 0.73 | 0.447774 |
Target: 5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3' miRNA: 3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 40248 | 0.73 | 0.439126 |
Target: 5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3' miRNA: 3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 248 | 0.73 | 0.439126 |
Target: 5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3' miRNA: 3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 65734 | 0.73 | 0.40552 |
Target: 5'- uGCUG-GGACGAUGUGUGGucCGCcgucggccgGCGCa -3' miRNA: 3'- -CGGCaCCUGCUGCGCACCu-GCG---------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 122638 | 0.75 | 0.328966 |
Target: 5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3' miRNA: 3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 158531 | 0.76 | 0.287772 |
Target: 5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3' miRNA: 3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 16562 | 0.77 | 0.263626 |
Target: 5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3' miRNA: 3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 158474 | 0.71 | 0.510761 |
Target: 5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3' miRNA: 3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 25958 | 0.71 | 0.557917 |
Target: 5'- ----aGGACGGCGC--GGACGUGUGCa -3' miRNA: 3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3296 | 0.7 | 0.615965 |
Target: 5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3' miRNA: 3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 49596 | 0.7 | 0.606226 |
Target: 5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3' miRNA: 3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 19428 | 0.7 | 0.606226 |
Target: 5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3' miRNA: 3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 14038 | 0.7 | 0.606226 |
Target: 5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3' miRNA: 3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 152968 | 0.7 | 0.596504 |
Target: 5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3' miRNA: 3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 52205 | 0.7 | 0.596504 |
Target: 5'- gGCCGUGG--GGCGC--GGugGCGCGa -3' miRNA: 3'- -CGGCACCugCUGCGcaCCugCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 45756 | 0.7 | 0.586807 |
Target: 5'- uGCCauaGGACcccuGCGCG-GGGCGCGCGg -3' miRNA: 3'- -CGGca-CCUGc---UGCGCaCCUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 114282 | 0.7 | 0.577139 |
Target: 5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3' miRNA: 3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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