Results 21 - 40 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 35512 | 0.66 | 0.79482 |
Target: 5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3' miRNA: 3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 129519 | 0.67 | 0.785262 |
Target: 5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3' miRNA: 3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 124161 | 0.67 | 0.786138 |
Target: 5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3' miRNA: 3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 157686 | 0.67 | 0.777329 |
Target: 5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3' miRNA: 3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 80189 | 0.67 | 0.776442 |
Target: 5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3' miRNA: 3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 80631 | 0.67 | 0.768403 |
Target: 5'- cCCGaGGACGA----UGGACGCGCGg -3' miRNA: 3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 87429 | 0.67 | 0.740995 |
Target: 5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3' miRNA: 3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 94414 | 0.67 | 0.740995 |
Target: 5'- cGgCGcGGACugcgcgaucgcuGACGUG-GGAUGCGCGUa -3' miRNA: 3'- -CgGCaCCUG------------CUGCGCaCCUGCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 66848 | 0.67 | 0.740995 |
Target: 5'- cGCCGUcGccCGACGCGaaauaGAuCGCGCGCg -3' miRNA: 3'- -CGGCA-CcuGCUGCGCac---CU-GCGCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 132626 | 0.67 | 0.750228 |
Target: 5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3' miRNA: 3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 53567 | 0.67 | 0.740995 |
Target: 5'- aGCuCGcGGuACGACGCGcccGACGCGUGg -3' miRNA: 3'- -CG-GCaCC-UGCUGCGCac-CUGCGCGCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 91290 | 0.67 | 0.753895 |
Target: 5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3' miRNA: 3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 59778 | 0.67 | 0.786138 |
Target: 5'- gGCCGUGGcuguccACGGC-CGUGucCGC-CGCg -3' miRNA: 3'- -CGGCACC------UGCUGcGCACcuGCGcGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 57038 | 0.67 | 0.789626 |
Target: 5'- aGCCGUGGgucGCGACcucuacguugguagaGCGUccgucgucaGcGGCGgGCGCa -3' miRNA: 3'- -CGGCACC---UGCUG---------------CGCA---------C-CUGCgCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 158599 | 0.67 | 0.759367 |
Target: 5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3' miRNA: 3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 59991 | 0.67 | 0.759367 |
Target: 5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3' miRNA: 3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 32548 | 0.67 | 0.759367 |
Target: 5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3' miRNA: 3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 39572 | 0.67 | 0.759367 |
Target: 5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3' miRNA: 3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 53355 | 0.67 | 0.750228 |
Target: 5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3' miRNA: 3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5' |
|||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 13599 | 0.67 | 0.750228 |
Target: 5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3' miRNA: 3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home