miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 39447 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 67270 0.71 0.52007
Target:  5'- cGCUGUGGuauagACGACGCGaaUGGGCGgGUa- -3'
miRNA:   3'- -CGGCACC-----UGCUGCGC--ACCUGCgCGcg -5'
24343 5' -59.7 NC_005264.1 + 45036 0.71 0.53888
Target:  5'- gGCaggaUGGACGGCGaCGaGGAUGCcGCGCa -3'
miRNA:   3'- -CGgc--ACCUGCUGC-GCaCCUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 58267 0.71 0.548373
Target:  5'- cCCGUGGGCGGCaugGCGcu--UGCGCGCa -3'
miRNA:   3'- cGGCACCUGCUG---CGCaccuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 25958 0.71 0.557917
Target:  5'- ----aGGACGGCGC--GGACGUGUGCa -3'
miRNA:   3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 99987 0.7 0.567508
Target:  5'- cUCGUGGACGAgGCGacGAaaCGCGaCGCg -3'
miRNA:   3'- cGGCACCUGCUgCGCacCU--GCGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 87578 0.7 0.567508
Target:  5'- cGCCGacgaGGACGaacacgGCGCGUGGuCGCGUu- -3'
miRNA:   3'- -CGGCa---CCUGC------UGCGCACCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 114282 0.7 0.577139
Target:  5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3'
miRNA:   3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 45756 0.7 0.586807
Target:  5'- uGCCauaGGACcccuGCGCG-GGGCGCGCGg -3'
miRNA:   3'- -CGGca-CCUGc---UGCGCaCCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 52205 0.7 0.596504
Target:  5'- gGCCGUGG--GGCGC--GGugGCGCGa -3'
miRNA:   3'- -CGGCACCugCUGCGcaCCugCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 37659 0.7 0.596504
Target:  5'- aUCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cGGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 152968 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 33941 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 19428 0.7 0.606226
Target:  5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3'
miRNA:   3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 14038 0.7 0.606226
Target:  5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3'
miRNA:   3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 49596 0.7 0.606226
Target:  5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3'
miRNA:   3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5'
24343 5' -59.7 NC_005264.1 + 139809 0.7 0.615965
Target:  5'- uGCCGUcGGcCGuCGCG-GGACGaaaCGCGUa -3'
miRNA:   3'- -CGGCA-CCuGCuGCGCaCCUGC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 97525 0.7 0.615965
Target:  5'- uGCCGcGGcUGugGCGUGG-CaGCGgGCa -3'
miRNA:   3'- -CGGCaCCuGCugCGCACCuG-CGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 3296 0.7 0.615965
Target:  5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3'
miRNA:   3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150986 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.