miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 154908 1.13 0.00097
Target:  5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3'
miRNA:   3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 131590 0.85 0.08403
Target:  5'- cGCCuagguGUGGAgGgagcggcGCGCGUGGGCGCGCGCg -3'
miRNA:   3'- -CGG-----CACCUgC-------UGCGCACCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 3606 0.82 0.11682
Target:  5'- gGCCGUGGugGACG-GUGGGCGCuGUGg -3'
miRNA:   3'- -CGGCACCugCUGCgCACCUGCG-CGCg -5'
24343 5' -59.7 NC_005264.1 + 16562 0.77 0.263626
Target:  5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3'
miRNA:   3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 158531 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 39504 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 3611 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 122638 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 79399 0.74 0.358261
Target:  5'- cGCCGcGGGCGugGCGaGGcCGCG-GCg -3'
miRNA:   3'- -CGGCaCCUGCugCGCaCCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 65734 0.73 0.40552
Target:  5'- uGCUG-GGACGAUGUGUGGucCGCcgucggccgGCGCa -3'
miRNA:   3'- -CGGCaCCUGCUGCGCACCu-GCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 100346 0.73 0.422122
Target:  5'- uCUGaUGGACGcCGUagaGGACGCGCGCa -3'
miRNA:   3'- cGGC-ACCUGCuGCGca-CCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 120788 0.73 0.430575
Target:  5'- cGCCGcGGGCaACGCGauUGGAuaggcCGCGUGCg -3'
miRNA:   3'- -CGGCaCCUGcUGCGC--ACCU-----GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 40248 0.73 0.439126
Target:  5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3'
miRNA:   3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 154948 0.73 0.439126
Target:  5'- -gCGUGGGgGACGuCGU--ACGCGCGCa -3'
miRNA:   3'- cgGCACCUgCUGC-GCAccUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 248 0.73 0.439126
Target:  5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3'
miRNA:   3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 8296 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 127323 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 42518 0.72 0.500603
Target:  5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3'
miRNA:   3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 140552 0.72 0.501523
Target:  5'- gGCUG-GGAUGGCagaaGGGCGCGCGCg -3'
miRNA:   3'- -CGGCaCCUGCUGcgcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 158474 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.