Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 31959 | 0.69 | 0.625714 |
Target: 5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3' miRNA: 3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 95357 | 0.69 | 0.632542 |
Target: 5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3' miRNA: 3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 53208 | 0.69 | 0.635469 |
Target: 5'- -aCGUGGcCGAgGUaGUGGACGCGUa- -3' miRNA: 3'- cgGCACCuGCUgCG-CACCUGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 124306 | 0.69 | 0.644246 |
Target: 5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3' miRNA: 3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 5279 | 0.69 | 0.644246 |
Target: 5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3' miRNA: 3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 103952 | 0.69 | 0.64522 |
Target: 5'- cGCUaUGcGCGaACGCGUGG-CGCuGCGCa -3' miRNA: 3'- -CGGcACcUGC-UGCGCACCuGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 156686 | 0.69 | 0.64522 |
Target: 5'- -aCGUGcacGCGAUGCGcgacGGGCGCGCGg -3' miRNA: 3'- cgGCACc--UGCUGCGCa---CCUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 43788 | 0.69 | 0.652042 |
Target: 5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3' miRNA: 3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 162814 | 0.69 | 0.652042 |
Target: 5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3' miRNA: 3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 91892 | 0.69 | 0.654963 |
Target: 5'- --gGUGGuuggccGCGGCaGCGaUGGGCGgGCGCg -3' miRNA: 3'- cggCACC------UGCUG-CGC-ACCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 52827 | 0.69 | 0.671483 |
Target: 5'- aCCGUGGuaaucaugcacaguGCuACGCG-GGAgcUGCGCGCa -3' miRNA: 3'- cGGCACC--------------UGcUGCGCaCCU--GCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 112255 | 0.68 | 0.683096 |
Target: 5'- cGCCG-GGcugcucaGCGcCGCGUGcGcuucccgcACGCGCGCg -3' miRNA: 3'- -CGGCaCC-------UGCuGCGCAC-C--------UGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 15369 | 0.68 | 0.684062 |
Target: 5'- cCCGUucgGGAgCGACGCGaUGGugGaGUGCc -3' miRNA: 3'- cGGCA---CCU-GCUGCGC-ACCugCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 35791 | 0.68 | 0.684062 |
Target: 5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3' miRNA: 3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 154817 | 0.68 | 0.684062 |
Target: 5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3' miRNA: 3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 15430 | 0.68 | 0.684062 |
Target: 5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3' miRNA: 3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 17334 | 0.68 | 0.687919 |
Target: 5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3' miRNA: 3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 12951 | 0.68 | 0.693694 |
Target: 5'- cGCCGUugccuaccGGGCGGCGCGcgccgccGACGaCGaCGCg -3' miRNA: 3'- -CGGCA--------CCUGCUGCGCac-----CUGC-GC-GCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 37241 | 0.68 | 0.703279 |
Target: 5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3' miRNA: 3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 156268 | 0.68 | 0.703279 |
Target: 5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3' miRNA: 3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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