miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 53208 0.69 0.635469
Target:  5'- -aCGUGGcCGAgGUaGUGGACGCGUa- -3'
miRNA:   3'- cgGCACCuGCUgCG-CACCUGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 53355 0.67 0.750228
Target:  5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3'
miRNA:   3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 53567 0.67 0.740995
Target:  5'- aGCuCGcGGuACGACGCGcccGACGCGUGg -3'
miRNA:   3'- -CG-GCaCC-UGCUGCGCac-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 57038 0.67 0.789626
Target:  5'- aGCCGUGGgucGCGACcucuacguugguagaGCGUccgucgucaGcGGCGgGCGCa -3'
miRNA:   3'- -CGGCACC---UGCUG---------------CGCA---------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 58267 0.71 0.548373
Target:  5'- cCCGUGGGCGGCaugGCGcu--UGCGCGCa -3'
miRNA:   3'- cGGCACCUGCUG---CGCaccuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 58614 0.66 0.803369
Target:  5'- uGUCGaauuccGAUGACcCGUGcGACGCGUGCu -3'
miRNA:   3'- -CGGCac----CUGCUGcGCAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 59778 0.67 0.786138
Target:  5'- gGCCGUGGcuguccACGGC-CGUGucCGC-CGCg -3'
miRNA:   3'- -CGGCACC------UGCUGcGCACcuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 59991 0.67 0.759367
Target:  5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3'
miRNA:   3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 65734 0.73 0.40552
Target:  5'- uGCUG-GGACGAUGUGUGGucCGCcgucggccgGCGCa -3'
miRNA:   3'- -CGGCaCCUGCUGCGCACCu-GCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 66848 0.67 0.740995
Target:  5'- cGCCGUcGccCGACGCGaaauaGAuCGCGCGCg -3'
miRNA:   3'- -CGGCA-CcuGCUGCGCac---CU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 67270 0.71 0.52007
Target:  5'- cGCUGUGGuauagACGACGCGaaUGGGCGgGUa- -3'
miRNA:   3'- -CGGCACC-----UGCUGCGC--ACCUGCgCGcg -5'
24343 5' -59.7 NC_005264.1 + 79399 0.74 0.358261
Target:  5'- cGCCGcGGGCGugGCGaGGcCGCG-GCg -3'
miRNA:   3'- -CGGCaCCUGCugCGCaCCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 80189 0.67 0.776442
Target:  5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3'
miRNA:   3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 80631 0.67 0.768403
Target:  5'- cCCGaGGACGA----UGGACGCGCGg -3'
miRNA:   3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 84320 0.68 0.727925
Target:  5'- aCCG-GGcACGGCGCGaUGGuuacuggccucacCGCGUGCa -3'
miRNA:   3'- cGGCaCC-UGCUGCGC-ACCu------------GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 86154 0.68 0.703279
Target:  5'- aCgGUGGGCGACaGCcUGGugGC-CGUg -3'
miRNA:   3'- cGgCACCUGCUG-CGcACCugCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 87040 0.68 0.722277
Target:  5'- cGCCuacGGACGGCGaCGaccUGGAgGCgaGCGCg -3'
miRNA:   3'- -CGGca-CCUGCUGC-GC---ACCUgCG--CGCG- -5'
24343 5' -59.7 NC_005264.1 + 87429 0.67 0.740995
Target:  5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3'
miRNA:   3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 87578 0.7 0.567508
Target:  5'- cGCCGacgaGGACGaacacgGCGCGUGGuCGCGUu- -3'
miRNA:   3'- -CGGCa---CCUGC------UGCGCACCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 87625 0.66 0.811778
Target:  5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3'
miRNA:   3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.