miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 31467 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31959 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 32548 0.67 0.759367
Target:  5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3'
miRNA:   3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 33941 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 35512 0.66 0.79482
Target:  5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3'
miRNA:   3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 35791 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 37241 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 37659 0.7 0.596504
Target:  5'- aUCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cGGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 38023 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 39447 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 39504 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 39572 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 40248 0.73 0.439126
Target:  5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3'
miRNA:   3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 42518 0.72 0.500603
Target:  5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3'
miRNA:   3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 43788 0.69 0.652042
Target:  5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3'
miRNA:   3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 45036 0.71 0.53888
Target:  5'- gGCaggaUGGACGGCGaCGaGGAUGCcGCGCa -3'
miRNA:   3'- -CGgc--ACCUGCUGC-GCaCCUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 45756 0.7 0.586807
Target:  5'- uGCCauaGGACcccuGCGCG-GGGCGCGCGg -3'
miRNA:   3'- -CGGca-CCUGc---UGCGCaCCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 49596 0.7 0.606226
Target:  5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3'
miRNA:   3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5'
24343 5' -59.7 NC_005264.1 + 52205 0.7 0.596504
Target:  5'- gGCCGUGG--GGCGC--GGugGCGCGa -3'
miRNA:   3'- -CGGCACCugCUGCGcaCCugCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 52827 0.69 0.671483
Target:  5'- aCCGUGGuaaucaugcacaguGCuACGCG-GGAgcUGCGCGCa -3'
miRNA:   3'- cGGCACC--------------UGcUGCGCaCCU--GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.