miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 139809 0.7 0.615965
Target:  5'- uGCCGUcGGcCGuCGCG-GGACGaaaCGCGUa -3'
miRNA:   3'- -CGGCA-CCuGCuGCGCaCCUGC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 138324 0.67 0.740995
Target:  5'- aGuuGUGGucAUGGCGCGUGcGCGacaagGCGCc -3'
miRNA:   3'- -CggCACC--UGCUGCGCACcUGCg----CGCG- -5'
24343 5' -59.7 NC_005264.1 + 136776 0.66 0.820038
Target:  5'- aGCCcaGUGaGuccuuuCGGCGCGUGGcCGgGCGg -3'
miRNA:   3'- -CGG--CAC-Cu-----GCUGCGCACCuGCgCGCg -5'
24343 5' -59.7 NC_005264.1 + 132626 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 131977 0.68 0.731675
Target:  5'- cGCCGUugccuaccGGGCGGCGCGccgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac------CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 131590 0.85 0.08403
Target:  5'- cGCCuagguGUGGAgGgagcggcGCGCGUGGGCGCGCGCg -3'
miRNA:   3'- -CGG-----CACCUgC-------UGCGCACCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 129519 0.67 0.785262
Target:  5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3'
miRNA:   3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 127323 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 124306 0.69 0.644246
Target:  5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3'
miRNA:   3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 124161 0.67 0.786138
Target:  5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3'
miRNA:   3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 122638 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 120788 0.73 0.430575
Target:  5'- cGCCGcGGGCaACGCGauUGGAuaggcCGCGUGCg -3'
miRNA:   3'- -CGGCaCCUGcUGCGC--ACCU-----GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 120634 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 114282 0.7 0.577139
Target:  5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3'
miRNA:   3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 112255 0.68 0.683096
Target:  5'- cGCCG-GGcugcucaGCGcCGCGUGcGcuucccgcACGCGCGCg -3'
miRNA:   3'- -CGGCaCC-------UGCuGCGCAC-C--------UGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 111583 0.66 0.811778
Target:  5'- cGCCGUGGuguuCuCGUGGugGCugcacaacGCGCu -3'
miRNA:   3'- -CGGCACCugcuGcGCACCugCG--------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 103952 0.69 0.64522
Target:  5'- cGCUaUGcGCGaACGCGUGG-CGCuGCGCa -3'
miRNA:   3'- -CGGcACcUGC-UGCGCACCuGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 103136 0.66 0.803369
Target:  5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3'
miRNA:   3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5'
24343 5' -59.7 NC_005264.1 + 101587 0.66 0.828143
Target:  5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3'
miRNA:   3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 100346 0.73 0.422122
Target:  5'- uCUGaUGGACGcCGUagaGGACGCGCGCa -3'
miRNA:   3'- cGGC-ACCUGCuGCGca-CCUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.