miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 162814 0.69 0.652042
Target:  5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3'
miRNA:   3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 161441 0.66 0.828143
Target:  5'- gGCCaggGGuCGuACGgGaaUGcGACGCGCGCa -3'
miRNA:   3'- -CGGca-CCuGC-UGCgC--AC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 159397 0.66 0.793094
Target:  5'- cGCCacGGGCGGCGgaccccugagaaGUGGG-GCGCGCc -3'
miRNA:   3'- -CGGcaCCUGCUGCg-----------CACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 158599 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 158531 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 158474 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 157686 0.67 0.777329
Target:  5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3'
miRNA:   3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 157050 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 156686 0.69 0.64522
Target:  5'- -aCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cgGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 156268 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 154948 0.73 0.439126
Target:  5'- -gCGUGGGgGACGuCGU--ACGCGCGCa -3'
miRNA:   3'- cgGCACCUgCUGC-GCAccUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154908 1.13 0.00097
Target:  5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3'
miRNA:   3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154817 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 152968 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 151852 0.66 0.828143
Target:  5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3'
miRNA:   3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 151536 0.66 0.79482
Target:  5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3'
miRNA:   3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 150986 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150494 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 149637 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 140552 0.72 0.501523
Target:  5'- gGCUG-GGAUGGCagaaGGGCGCGCGCg -3'
miRNA:   3'- -CGGCaCCUGCUGcgcaCCUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.