miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 53355 0.67 0.750228
Target:  5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3'
miRNA:   3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 80189 0.67 0.776442
Target:  5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3'
miRNA:   3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 103136 0.66 0.803369
Target:  5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3'
miRNA:   3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5'
24343 5' -59.7 NC_005264.1 + 96227 0.66 0.828143
Target:  5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3'
miRNA:   3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 52827 0.69 0.671483
Target:  5'- aCCGUGGuaaucaugcacaguGCuACGCG-GGAgcUGCGCGCa -3'
miRNA:   3'- cGGCACC--------------UGcUGCGCaCCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 30610 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 129519 0.67 0.785262
Target:  5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3'
miRNA:   3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 101587 0.66 0.828143
Target:  5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3'
miRNA:   3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 38023 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 151852 0.66 0.828143
Target:  5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3'
miRNA:   3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 157686 0.67 0.777329
Target:  5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3'
miRNA:   3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 13599 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 151536 0.66 0.79482
Target:  5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3'
miRNA:   3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 94593 0.66 0.798256
Target:  5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3'
miRNA:   3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 87625 0.66 0.811778
Target:  5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3'
miRNA:   3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 31467 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31959 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 43788 0.69 0.652042
Target:  5'- cGCCGUGGguGCGGggcgcaguuucuguCGCGauauaGcGugGCGCGCa -3'
miRNA:   3'- -CGGCACC--UGCU--------------GCGCa----C-CugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 12951 0.68 0.693694
Target:  5'- cGCCGUugccuaccGGGCGGCGCGcgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac-----CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 87040 0.68 0.722277
Target:  5'- cGCCuacGGACGGCGaCGaccUGGAgGCgaGCGCg -3'
miRNA:   3'- -CGGca-CCUGCUGC-GC---ACCUgCG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.