Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 161441 | 0.66 | 0.828143 |
Target: 5'- gGCCaggGGuCGuACGgGaaUGcGACGCGCGCa -3' miRNA: 3'- -CGGca-CCuGC-UGCgC--AC-CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 129519 | 0.67 | 0.785262 |
Target: 5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3' miRNA: 3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 80189 | 0.67 | 0.776442 |
Target: 5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3' miRNA: 3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 154908 | 1.13 | 0.00097 |
Target: 5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3' miRNA: 3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 31467 | 0.66 | 0.828143 |
Target: 5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3' miRNA: 3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 29274 | 0.66 | 0.828143 |
Target: 5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3' miRNA: 3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 87625 | 0.66 | 0.811778 |
Target: 5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3' miRNA: 3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 58614 | 0.66 | 0.803369 |
Target: 5'- uGUCGaauuccGAUGACcCGUGcGACGCGUGCu -3' miRNA: 3'- -CGGCac----CUGCUGcGCAC-CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 94593 | 0.66 | 0.798256 |
Target: 5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3' miRNA: 3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 124161 | 0.67 | 0.786138 |
Target: 5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3' miRNA: 3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 23246 | 0.66 | 0.79482 |
Target: 5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3' miRNA: 3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 103136 | 0.66 | 0.803369 |
Target: 5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3' miRNA: 3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 151852 | 0.66 | 0.828143 |
Target: 5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3' miRNA: 3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 151536 | 0.66 | 0.79482 |
Target: 5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3' miRNA: 3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 101587 | 0.66 | 0.828143 |
Target: 5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3' miRNA: 3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 1607 | 0.66 | 0.803369 |
Target: 5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3' miRNA: 3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 159397 | 0.66 | 0.793094 |
Target: 5'- cGCCacGGGCGGCGgaccccugagaaGUGGG-GCGCGCc -3' miRNA: 3'- -CGGcaCCUGCUGCg-----------CACCUgCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 157686 | 0.67 | 0.777329 |
Target: 5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3' miRNA: 3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 96227 | 0.66 | 0.828143 |
Target: 5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3' miRNA: 3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 92043 | 0.66 | 0.820038 |
Target: 5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3' miRNA: 3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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