Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 91290 | 0.67 | 0.753895 |
Target: 5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3' miRNA: 3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 91892 | 0.69 | 0.654963 |
Target: 5'- --gGUGGuuggccGCGGCaGCGaUGGGCGgGCGCg -3' miRNA: 3'- cggCACC------UGCUG-CGC-ACCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 92043 | 0.66 | 0.820038 |
Target: 5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3' miRNA: 3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 93823 | 0.68 | 0.731675 |
Target: 5'- cGCCGUGGcacaguACGAUgGCGacagGGcCGCGgGCc -3' miRNA: 3'- -CGGCACC------UGCUG-CGCa---CCuGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 94414 | 0.67 | 0.740995 |
Target: 5'- cGgCGcGGACugcgcgaucgcuGACGUG-GGAUGCGCGUa -3' miRNA: 3'- -CgGCaCCUG------------CUGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 94593 | 0.66 | 0.798256 |
Target: 5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3' miRNA: 3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 95357 | 0.69 | 0.632542 |
Target: 5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3' miRNA: 3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 95444 | 0.66 | 0.79482 |
Target: 5'- cGUCGUGGAauaCGcuacCGCGccGGCGgGCGCa -3' miRNA: 3'- -CGGCACCU---GCu---GCGCacCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 96227 | 0.66 | 0.828143 |
Target: 5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3' miRNA: 3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 97525 | 0.7 | 0.615965 |
Target: 5'- uGCCGcGGcUGugGCGUGG-CaGCGgGCa -3' miRNA: 3'- -CGGCaCCuGCugCGCACCuG-CGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 99987 | 0.7 | 0.567508 |
Target: 5'- cUCGUGGACGAgGCGacGAaaCGCGaCGCg -3' miRNA: 3'- cGGCACCUGCUgCGCacCU--GCGC-GCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 100346 | 0.73 | 0.422122 |
Target: 5'- uCUGaUGGACGcCGUagaGGACGCGCGCa -3' miRNA: 3'- cGGC-ACCUGCuGCGca-CCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 101587 | 0.66 | 0.828143 |
Target: 5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3' miRNA: 3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 103136 | 0.66 | 0.803369 |
Target: 5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3' miRNA: 3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 103952 | 0.69 | 0.64522 |
Target: 5'- cGCUaUGcGCGaACGCGUGG-CGCuGCGCa -3' miRNA: 3'- -CGGcACcUGC-UGCGCACCuGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 111583 | 0.66 | 0.811778 |
Target: 5'- cGCCGUGGuguuCuCGUGGugGCugcacaacGCGCu -3' miRNA: 3'- -CGGCACCugcuGcGCACCugCG--------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 112255 | 0.68 | 0.683096 |
Target: 5'- cGCCG-GGcugcucaGCGcCGCGUGcGcuucccgcACGCGCGCg -3' miRNA: 3'- -CGGCaCC-------UGCuGCGCAC-C--------UGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 114282 | 0.7 | 0.577139 |
Target: 5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3' miRNA: 3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 120634 | 0.66 | 0.803369 |
Target: 5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3' miRNA: 3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 120788 | 0.73 | 0.430575 |
Target: 5'- cGCCGcGGGCaACGCGauUGGAuaggcCGCGUGCg -3' miRNA: 3'- -CGGCaCCUGcUGCGC--ACCU-----GCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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